Akhtar Y, Choudhary R, Sharma KC, Sharma M (2017) Genetic variability and relationship studies of Ber Ziziphus nummularia (Burm. F.) using morphological and molecular markers. Pharmacogn J. 9(3):417–424
Article
Google Scholar
Alansi S, Tarroum M, Al-Qurainy F, Khan S, Nadeem M (2016) Use of ISSR markers to assess the genetic diversity in wild medicinal Ziziphus spina-christi (L.) Willd. collected from different regions of Saudi Arabia, Biotechnology & Biotechnological Equipment 30:5, 942–7. https://doi.org/10.1080/13102818.2016.1199287
Bhandawat A, Sharma V, Sharma H, Sood A, Sharma RK (2014) Development and cross transferability of functionally relevant microsatellite markers in D. latiflorus and related bamboo species. J Genet 94:48–55. https://doi.org/10.1007/s12041-014-0377-9
Bhandawat A, Sharma V, Singh P, Seth R, Nag A, Kaur J, Sharma RK (2019) Discovery and utilization of EST-SSR marker resource for genetic diversity and population structure analyses of a subtropical bamboo, Dendrocalamus hamiltonii. Biochem Genet 57(5):652–672
Article
Google Scholar
Botstein D, White KL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314–33l
Google Scholar
Boussaid M, Taïbi K, Abderrahim LA, Ennajah A (2018) Genetic diversity of Ziziphus lotus natural populations from Algeria based on fruit morphological markers. Arid Land Research and Management
Chahota RK, Sharma V, Rana M, Sharma R, Choudhary S, Sharma TR, Shirasawa K, Hirakawa H, Isobe SN (2020) Construction of a framework linkage map and genetic dissection of drought- and yield-related QTLs in horsegram (Macrotylomauniflorum). Euphytica, 216, Article number: 61
Chahota RK, Shikha D, Rana M, Sharma V, Nag A, Sharma TR, Rana JC, Hiakawa H, Isobe S (2017) Development and characterisation of SSR markers to study genetic diversity and population structure of horsegram germplasm (Macrotyloma uniflorum). PlantMol Biol Rep. https://doi.org/10.1007/s11105-017-1045-z.
Chakravarthi BK, Naravaneni R (2006) SSR marker based DNA fingerprinting and diversity study in rice (Oryza sativa L.) African. J. Biotech 5:684–688
Google Scholar
Chen W, Hou L, Zhang Z, Pang X, Li Y (2017) Genetic diversity, population structure, and linkage disequilibrium of a core collection of Ziziphus jujuba assessed with genome-wide SNPs developed by genotyping-by sequencing and SSR markers. Front Plant Sci 8:575. https://doi.org/10.3389/fpls.2017.00575.
Article
Google Scholar
Chiou CY, Chiang YC, Chen CH, Yen CR, Lee SR, Lin YS, Tsai CC (2012) Development and characterization of 38 polymorphic microsatellite markers from an economically important fruit tree, the Indian jujube. Am J Botany:199–202
Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos Trans Royal Society B: Biol Sci 363:557–572
Article
Google Scholar
Devanshi, Singh AK, Sharma P, Singh B, Singh R, Singh NK (2007) Molecular profiling and relationship among ber (Zizizphus sp.) genotypes using RAPD markers. Indian J Genet 67(2):121–7. https://doi.org/10.1080/15324982.2018.1424742
Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12(1):13
MathSciNet
Google Scholar
Earl DA, Von Holdt BM (2011) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359–361
Article
Google Scholar
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620
Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multi locus genotype data: dominant markers and null alleles. Mol Ecol Notes 7(4):574–578
Article
Google Scholar
Fu PC, Zhang YZ, Ya HY, Gao QB (2016) Characterization of SSR genomic abundance and identification of SSR markers for population genetics in Chinese jujube (Ziziphus jujuba Mill.). Peer J 4:e1735. https://doi.org/10.7717/peerj.1735.
Article
Google Scholar
Gupta RB, Sharma S, Sharma JR, Panwar RD (2003) Study on vegetative characters of some cultivated and wild forms of ber (Ziziphus spp.). Haryana J Hort Sci 32(1/2):15–18
Google Scholar
Hartl DL, Clark AG (1997) Principles of population genetics, 3rd edn. Sinauer Assoc, Sunderland, Massachsetts, p 163
Google Scholar
Hartl DL, Jones EW (2005) DNA structure and DNA manipulation. In Genetics: analysis of genes and genomes, 5th edn. Ch. 2: 36-85. Sudbury: Jones and Bartlett Pub
Google Scholar
Heikrujam M, Kumar J, Agrawal V (2015) Genetic diversity analysis among male and female Jojoba genotypes employing gene targeted molecular markers, start codon targeted (SCoT) polymorphism and CAAT box-derived polymorphism (CBDP) markers. Meta Gene 5:90–97
Huang J, Yang X, Zhang C, Yin X, Liu S, Li X (2015) Development of chloroplast microsatellite markers and analysis of chloroplast diversity in Chinese jujube (Ziziphus jujuba Mill.) and Wild jujube (Ziziphus acidojujuba Mill.). Plos One 10(9):0134519. https://doi.org/10.1371/journal.pone.0134519.
Article
Google Scholar
Jayaswall K, Sharma H, Bhandawat A, Sagar R, Yadav VK, Sharma V, Mahajan V, Rot J, Singh M (2019) Development of intron length polymorphic (ILP) markers in onion (Allium cepa L.), and their cross-species transferability in garlic (A. sativum L.) and wild relatives. Genet Resour Crop Evol. https://doi.org/10.1007/s10722-019-00808-3.
Kaldate R, Rana M, Sharma V, Hirakawa H, Kumar R, Singh G, Chahota RK, Isobe SN, Sharma TR (2017) Development of genome-wide SSR markers in horsegram and their utilization for genetic diversity and cross-transferability analysis. Mol Breed 37:103. https://doi.org/10.1007/s11032-017-0701-1.
Article
Google Scholar
Kalinowski ST, Taper ML, Marshell TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 16:1099–1106
Article
Google Scholar
Kamunya SM, Wachira FN, Pathak RS, Korir R, Sharma V, Kumar R, Bhardwaj P, Chalo R, Ahuja PS, Sharma RK (2010) Genomic mapping and testing for quantitative trait loci in tea (Camellia sinensis (L.) O. Kuntze). Tree Genet Genomes 6:915–929
Article
Google Scholar
Kaur K, Sharma V, Singh V, Wani MS, Gupta RC (2016) Development of novel SSR markers for evaluation of genetic diversity and population structure in Tribulus terrestris L. (Zygophyllaceae). 3Biotech 6:156
Koul PM, Sharma V, Rana M, Chahota RK, Kumar S, SharmaTR (2017) Genetic structure and interrelationships in lentil species using morphological and SSR markers. 3Biotech 7:83
Li S, Guo M, Fu P, Liu H, Zhao X (2018) Genetic diversity and population structure of Chinese jujube (Ziziphus jujuba Mill.) and sour jujube (Ziziphus acidojujuba Mill.) using inter-simple sequence repeat (ISSR) Markers. Peers J Preprints 6:e27088v1
Google Scholar
Liang T, Sun W, Ren H, Ahmad I, Vu N, Maryam HJ (2019) Genetic diversity of Ziziphus mauritiana germplasm based on SSR markers and ploidy level estimation. Planta 249(6):1875–1887
Article
Google Scholar
Liu M, Zhao J, Cai Q et al (2014) The complex jujube genome provides insights into fruit tree biology. Nature Communications 5:5315. https://doi.org/10.1038/ncomms6315.
Article
Google Scholar
Mehta R, Sharma V, Sood A, Sharma M, Sharma RK (2011) Induction of somatic embryogenesis and analysis of genetic fidelity of in vitro-derived plantlets of Bambusa nutans Wall., using AFLP markers. European J Foreest Res 130:729–736
Article
Google Scholar
Mishra T, Khullar M, Bhatia A (2011) Anticancer potential of aqueous ethanol seed extract of Ziziphus mauritiana against cancer cell lines and ehrlich ascites carcinoma. Evidence based Complementary and Alternative Medicine Vol Article ID 765029. https://doi.org/10.1155/2011/76502911.
Moustafa MF, Hesham AEL, Quraishi MS, Alrumman SA (2016) Variations in genetic and chemical constituents of Ziziphus spina-christi L. populations grown at various altitudinal zonation up to 2227 m height. J. of Gen Eng Biotechnol 14(2):349–362
Article
Google Scholar
Nabavi ST, Farahan F, Sheidai M, Poursakhi K, Naeini MR (2019) Population genetic study of Ziziphus jujuba Mill.: insight in to wild and cultivated plants genetic structure. Caryologia 72(4):85–92. https://doi.org/10.13128/caryologia-405.
Article
Google Scholar
Nyanga LK, Gadaga TH, Nout MJR, Smid EJ, Boekhout T, Zwietering MH (2013) Nutritive value of masau (Ziziphus mauritiana) fruits from Zambezi valley in Zimbabwe. Food Chem 138(1):168–172
Article
Google Scholar
Obeed RS, Harhash MM, Abdel-Mawgood AL (2008) Fruit properties and genetic diversity of five ber (Ziziphus mauritiana Lamk.) cultivars. Pakistan J Bio Sci 11:888–893
Article
Google Scholar
Patial A, Paul S, Sharma V (2017) Genetic diversity analysis using RAPD and ISSR markers revealed discrete genetic makeup in relation to fiber and oil content in Linum usitatissimum L. genotypes. The. Nucleus. https://doi.org/10.1007/s13237-017-0206-7.
Pawlowska AM, Camangi F, Bader A, Braca A (2009) Flavonoids of Zizyphus jujube L. and Zizyphus spina-christi (L.) Willd (Rhamnaceae) fruits. Food Chemistry 112:858–862
Article
Google Scholar
Perrier X, Jacquemoud-Collet, JP (2006) DARwin software http://darwin.cirad.fr/darwin
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multi locus genotype data. Genetics 155:945–959
Article
Google Scholar
Raina SN, Ahuja PS, Sharma RK, Das SC, Bhardwaj P, Negi R, Sharma V et al (2012) Gen Struct Divers India Hybrid tea Genet Res CropEvol. https://doi.org/10.1007/s10722-011-9782-6.
Rana JC, Chahota RK, Sharma V, Rana M, Verma N, Verma B, Tilak R Sharma TR (2015) Genetic diversity and structure of Pyrus accessions of Indian Himalayan region based on morphological and SSR markers. TreeGenet Genomes Article ID 821
Saha D, Srivastava SC, Ramani R (2013) Genetic relationships among fruit cultivars and host plants of Indian lac insect in ber (Ziziphus mauritiana Lam.) revealed by RAPD and ISSR markers. Indian J Biotech 12:170–177
Google Scholar
Saran PL, Godara AK, Sehrawat SK (2006) Characterization of ber (Ziziphus mauritiana Lamk.) genotypes. Haryana J Hort Sci 35(3/4):215–218
Google Scholar
Sehrawat SK, Boora KS, Dahiya DS, Ahlawat VP, Goyal RK (2006) DNA fingerprinting of ber (Ziziphus mauritiana Lamk.) germplasm. Haryana J Horticultural Sci 35:213–214
Google Scholar
Sharma H, Kumar P, Singh A, Aggarwal K, Roy J, Sharma V, Rawat S (2020) Development of polymorphic EST-SSR markers and their applicability in genetic diversity evaluation in Rhododendron arboreum. Mol Biol Rep. https://doi.org/10.1007/s11033-020-05300-1.
Sharma H, Kumar R, Sharma V, Kumar V, Bhardwaj P, Ahuja PS, Sharma RK (2011) Identification and cross-species transferability of 112 novel unigene-derived microsatellite markers in tea (Camelliasinensis). Am J Bot 98:e133–e138
Article
Google Scholar
Sharma RK, Gupta P, Sharma V, Sood A, Mohapatra T, Ahuja PS (2008) Evaluation of rice and sugarcane SSR markers for phylogenetic and genetic diversity analyses in bamboo. Genome 51:91–103
Article
Google Scholar
Sharma S, Sharma V, Chhabra M, Rathour R, Sharma KD, Kapila RK (2014) Characterization of novel polymorphic microsatellite markers in Dactylorhiza hatagirea: a critically endangered orchid species from Western Himalayas. Conserv Genet Resour. https://doi.org/10.1007/s12686-014-0361-y.
Sharma V, Bhardwaj P, Kumar R, Sharma RK, Sood A, Ahuja PS (2009) Identification and cross-species amplification of EST derivedSSR markers in different bamboospecies. Conserv Genet10 3:721–724
Article
Google Scholar
Sharma V, Rana M, Katoch M, Sharma PK, Ghani M, Rana JC, Sharma TR, Chahota RK (2015a) Development of SSR and ILP markers in horsegram (Macrotyloma uniflorum), their characterization, cross-transferability and relevance for mapping. Mol Breed 35:102
Article
Google Scholar
Sharma V, Wani MS, Singh V, Kaur K, Gupta RC (2017) Development and characterization of novel microsatellite markers in Trillium govanianum- a threatened plant species from north-western Himalaya. 3Biotech7:190
Sharma V, Sharma TR, Rana JC, Chahota RK (2015b) Analysis of genetic diversity and population structure in horsegram (macrotyloma uniflorum) using RAPD and ISSR markers. Agric Res 4(3):221–230
Article
Google Scholar
Shen J, Sun Z, Hou S, Liu R, Wang Y, Guo P (2020) Assessment of genetic diversity in Ziziphus jujube Mill. cultivars derived from northern China using inter-simple sequence repeat markers. Crop Science60:320–329
Singh AK, Devanshi SP, Singh R, Singh B, Koundal KR, Singh NK (2007) Assessment of genetic diversity in Ziziphus mauritiana using inter-simple sequence repeat markers. J. Plant Biochem Biotechn 16(1):35–40
Article
Google Scholar
Singh AK, Sharma RK, Singh NK, Bansal KC, Koundal KR, Mohapatra T (2006) Genetic diversity in ber (Ziziphus sp.) revealed by AFLP markers. J Hort Sci Biotechnol 81:205–210
Article
Google Scholar
Singh SK, Meghwal PR, Pathak R, Bhatt RK, Gautam R (2014) Assessment of genetic diversity among Indian jujube varieties based on nuclear ribosomal DNA and RAPD polymorphism. Agric Res. 3:218–228
Article
Google Scholar
Singh SK, Chhajer S, Pathak R, Bhatt RK, Kalia RK (2017a) Genetic diversity of Indian jujube cultivars using SCoT, ISSR, and rDNA markers. Tree Genet Genomes 13:12
Staub JC, Serquen FC, Mccreight JA (1997) Genetic diversity in cucumber (Cucumis sativus L.). An evaluation of Indian germplasm. Gen Res Crop Evolution 44:315–326
Article
Google Scholar
Tabin S, Kamili AN, Ganie SA, Zargar O, Sharma V, Gupta RC (2016) Genetic diversity and population structure ofRheum species in Kashmir Himalayas based on ISSR markers. Flora 223:121–128
Article
Google Scholar
Thanna EM, Yousif AM, Farag ME (2011) Morphlogical, physiological and biochemical genetic studies on some Indian jujube (Ziziphus mauritiana Lamak.) varieties grown at El Nubaria. Egyptian J Agricultural Res 89:1499–1525
Article
Google Scholar
Vashishtha BB (2001) Ber varieties: a monograph. Agrobios (India), Agro House, Behind Nasrani Cinema, Chopasani Road, Jodhpur, Rajasthan, India, p 97
Google Scholar
Wang S, Liu Y, Ma L, Liu H, Tang Y, Wu L, Wang Z, Li Y, Wu R, Pang X (2014) Isolation and characterization of microsatellite markers and analysis of genetic diversity in Chinese Jujube (Ziziphus jujuba Mill.). Plos One 9:e99842
Article
Google Scholar
Wani MS, Gupta RC, Munshi AH, Sharma V (2018a) Development and characterization of SSR markers in Himalayantree species Betula utilis D. Don, J Forestry Res (Accepted)
Google Scholar
Wani MS, Gupta RC, Munshi AH (2018b) Sharma V. Genetic diversity andstructure of Betula utilis accessions of north-western Himalaya based on RAPD and ISSR markers, The Nucleus (Accepted)
Google Scholar
Xu C, Gao J, Du Z, Li D, Wang Z, Li Y, Pang X (2016) Identifying the genetic diversity, genetic structure and a core collection of Ziziphus jujube Mill. var. jujuba accessions using microsatellite markers. Sci Rep 6:31503. https://doi.org/10.1038/srep31503.
Article
Google Scholar
Xu Y (2010) Molecular plant breeding. CAB International
Book
Google Scholar
Zhang C, Yin X, Li X, Huang J, Wang C, Lian C (2013) Development and characterization of microsatellite markers for sour jujube (Ziziphus jujuba var. spinosa). Indian J Genet 73(3):338–341