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Table 2 SSR primers used in the present study with the details of alleles amplified and diversity indices

From: Assessment of genetic diversity and population structure in wild Ziziphus species from northwest India using SSR marker technique

Primer name

Primer sequence

Repeat motif

Ta (°C)

Alleles

Size range (bp)

Ho

He

PIC

MI

BFU0263

F-GGTTTTTGTGGGTATGGAGGT

R-AGGAAAACAAAGGGATGGAGA

(CT)11

50

3

120–280

0.583

0.434

0.49

1.49

BFU0286

F-GATTGTTGCTGGTTTCCATGT

R-CTGGACTCTCCGATGCAGTAG

(AG)10

51

2

160–170

1.000

0.505

0.02

0.04

BFU0377

F-CCAGCTGGTATCCAATTGCT

R-ACGACGATGCCATGAAAGAT

(CT)10

50

2

300–330

0.708

0.544

0.45

0.90

BFU0473

F-GTCCTGATGTGGAGTGCATTT

R-TCTACAAGGACGAATCGTTGC

(AG)9

52

2

190–200

0.042

0.538

0.33

0.66

BFU0581

F-TGAGAAGGTTGAAGATGCTCTC

R-CCTGACATCCATTTGAAGGAA

(CA)7

50

3

80–150

0.708

0.559

0.44

1.34

BFU1157

F-TCCCTAAATTACCCTTCCCAAT

R-AAAGCGACAGCGAAAACTGT

(GA)9

50

2

120–130

0.021

0.595

0.35

0.70

BFU1205

F-TGTTGCTGGTTCAATTCCAG

R-CTTATGGCTTTTTCATTTTGTGA

(CA)8

48

2

80–100

0.188

0.651

0.48

0.97

BFU1409

F-CAAATGATGGATCGAGCAAA

R-AATGGAGGACAAACCGTCAC

(CA)6

48

3

80–100

0.396

0.644

0.49

1.49

BFU1178

F-CCTTGGTGGATTTTGGTTTG

R-TATACTTTGGCAGCGGTGTG

(TG)9

50

4

100–250

0.625

0.619

0.49

1.96

BFU0308

F-TTTCCACCCCAAAATACCAA

R-AGACGCTGGATGAGGATGAT

(TC)11

49

3

150–450

0.104

0.293

0.46

1.39

BFU0083

F-TTTTCCAACCCTCCCTCCA

R-CCTCATAACTGCGACGGCTT

(CT)13

51

2

90–100

0.083

0.557

0.36

0.72

BFU0467

F-CCGGACCGAGTGGAGTTATTA

R-AGAATATGGCATCAACCTATACCA

(TC)9

52

2

100–130

0.250

0.649

0.48

0.97

BFU0528

F-TTTGTGAGGTATAATGGCTTTCA

R-GCCTCTGTTGAAGCAAGGAA

(TC)8

50

2

100–150

0.063

0.442

0.50

1.00

BFU1248

F-TCCCACCACTTTCCTCTCAT

R-TTTTTCAAGACCTCCACGATG

(ATTA)4

50

2

100–300

0.000

0.434

0.50

1.00

BFU1279

F-TTTTTCAAGACCTCCACGATG

R-TCCCACCACTTTCCTCTCAT

(TTAA)4

50

2

150–200

0.271

0.511

0.48

0.97

BFU0249

F-AATGGGTCCACGTAGACAGG

R-GCCCTGAGGTTGGACATAGA

(GT)12

54

2

200–250

0.083

0.483

0.49

0.99

BFU0561

F-CCAGATGTGTCTCGATGCTT

R-CCAGATGTGTCTCGATGCTT

(CT)7

52

2

350–500

0.125

0.482

0.49

0.99

BFU0574

F-GAAGGTTGAAGATGCTCTCTCTC

R-CCTGACATCCATTTGAAGGAA

(CA)7

51

3

100–250

0.271

0.639

0.44

1.33

BFU0479

F-GAAAACCATTGTTGGAGACCA

R-TGAACCAAGCAACAAAAATCA

(TC)9

47

4

250–450

0.563

0.776

0.48

1.92

ZCMS14

F-GAAGCTCCAATAACACGTTACC

R-ACAATTCCCCAAATCTAAACTG

(AG)8

49

4

300–500

0.854

0.719

0.45

1.80

ZCMS1

F-CTCATCTTCTAAAACCAAAAACC

R-CTCTGTCAACATATCTGGCTTG

(AG)10

50

2

100–200

0.313

0.641

0.49

0.98

ZCMS2

F-CTTCTAAAACCAAAAACCCTTC

R-CTCTGTCAACATATCTGGCTTG

(GA)12

49

2

100–150

0.479

0.653

0.47

0.95

ZCMS11

F-CAACTCTGCATCAAATCCATC

R-TGACTGTTCCGATAATTTCAAC

(GA)8

49

2

300–400

0.063

0.460

0.47

0.94

Mean

   

2.47

 

0.063

0.442

0.44

1.11

  1. Ta annealing temperature, Ho observed heterzygosity, He expected heterozygosity, PIC polymorphism information content, MI marker index