Table 1 Mapping of sequences (short reads) of three Philippine mango species to Alphonso and Tommy Atkins mango reference genomes
Reference genome | Mapping statistics | Huania | Pahob | Carabaoc |
|---|---|---|---|---|
Alphonso | Total reads | 22,856,937 | 20,769,897 | 18,930,358 |
Mapped reads | 21,728,943 (95.07%) | 19,397,174 (93.39%) | 17,881,109 (94.46%) | |
Properly paired | 19,974,549 (87.39%) | 17,539,532 (84.45%) | 16,351,261 (86.38%) | |
Singletons | 352,354 (1.54%) | 454,708 (2.20%) | 330,257 (1.74%) | |
Sequencing coverage | 4.30 | 3.98 | 3.55 | |
Tommy Atkins | Total reads | 22,869,467 | 20,785,198 | 18,945,242 |
Mapped reads | 21,660,395 (94.71%) | 19,359,194 (93.14%) | 17,806,147 (93.99%) | |
Properly paired | 19,711,973 (86.19%) | 17,302,309 (83.24%) | 16,061,097 (84.78%) | |
Singletons | 391,435 (1.71%) | 482,123 (2.32%) | 368,930 (1.95%) | |
Sequencing coverage | 3.53 | 3.26 | 2.91 |