Table 8 Peptides showing interaction to HLA-DRB0101, NETMHCII PAN 4.0 server results, and VaxiJen score
From: Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei
Pos | Peptide | ID | Score | Rank | VaxiJen score | Inference |
|---|---|---|---|---|---|---|
39 | NRRFIVLTGNREFTA | WP_042506957.1 | 0.958934 | 0.16 | −0.4516 | Nonantigenic |
316 | KPSYLSALSAHLNDK | WP_042506954.1 | 0.978324 | 0.06 | 0.7208 | Antigenic |
384 | LQKYLNLNSLPVRIE | WP_042506954.1 | 0.968518 | 0.11 | 1.1646 | Antigenic |
580 | IEDISALPGFGVKTA | WP_042506954.1 | 0.960251 | 0.15 | 0.7039 | Antigenic |
227 | RDKIQAAQTVLSRSA | WP_042506954.1 | 0.805061 | 0.85 | 0.1459 | Antigenic |
77 | EFSRFLVSSGVQVRF | WP_042506082.1 | 0.651559 | 1.60 | 0.4449 | Antigenic |
235 | KTPLISAIGHEADRP | WP_042506175.1 | 0.966542 | 0.12 | −0.0952 | Nonantigenic |
231 | DDFWAALRAYSGRSR | WP_042506056.1 | 0.960550 | 0.15 | 0.2368 | Antigenic |
24 | FKSFNYNVAIGVRQP | WP_011096407.1 | 0.916978 | 0.35 | 0.7126 | Antigenic |
3 | PARFFFVSPLSCVKP | WP_206536426.1 | 0.691033 | 1.40 | 0.6685 | Antigenic |