From: Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei
Codon | Frequency (no. of codon) | Codon | Frequency (no. of codon) | Codon | Frequency (no. of codon) | Codon | Frequency (no. of codon) |
---|---|---|---|---|---|---|---|
UUU | 30.4 (7947) | UCU | 19.8 (5158) | UAU | 17.4 (4531) | UGU | 6.9 (1813) |
UUC | 11.4 (2984) | UCC | 10.3 (2683) | UAC | 10.5 (2743) | UGC | 5.7 (1496) |
UUA | 10.7 (2802) | UCA | 15.6 (4063) | UAA | 1.0 (251) | UGA | 1.0 (265) |
UUG | 17.7 (4611) | UCG | 9.8 (2567) | UAG | 1.0 (267) | UGG | 10.0 (2603) |
CUU | 31.9 (8314) | CCU | 10.6 (2762) | CAU | 12.8 (3343) | CGU | 11.5 (2996) |
CUC | 13.4 (3509) | CCC | 9.8 (2560) | CAC | 7.8 (2034) | CGC | 11.5 (3008) |
CUA | 10.8 (2829) | CCA | 13.8 (3610) | CAA | 12.6 (3276) | CGA | 5.8 (1513) |
CUG | 18.2 (4741) | CCG | 11.5 (3014) | CAG | 18.4 (4793) | CGG | 6.7 (1747) |
AUU | 30.7 (8013) | ACU | 12.8 (3352) | AAU | 23.7 (6193) | AGU | 13.1 (3413) |
AUC | 12.9 (3377) | ACC | 14.6 (3803) | AAC | 12.1 (3149) | AGC | 10.7 (2781) |
AUA | 23.6 (6166) | ACA | 20.1 (5243) | AAA | 26.2 (6829) | AGA | 13.6 (3546) |
AUG | 17.9 (4662) | ACG | 8.1 (2108) | AAG | 21.2 (5533) | AGG | 13.1 (3409) |
GUU | 36.9 (9638) | GCU | 21.3 (5567) | GAU | 36.7 (9577) | GGU | 25.0 (6521) |
GUC | 12.2 (3193) | GCC | 19.6 (5111) | GAC | 16.2 (4218) | GGC | 18.7 (4884) |
GUA | 14.7 (3835) | GCA | 26.1 (6821) | GAA | 25.2 (6578) | GGA | 14.9 (3879) |
GUG | 16.3 (4256) | GCG | 16.2 (4239) | GAG | 24.9 (6488) | GGG | 14.6 (3813) |
GC percent information | Coding GC 46.41% | Ist letter GC 54.66% | 2nd letter GC 42.27% | 3rd letter GC 42.29% |