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Table 4 Tropheryma whipplei TW08/27783 CDSs and 261028 codons, frequency per thousand, and in bracket number of codons

From: Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei

Codon

Frequency (no. of codon)

Codon

Frequency (no. of codon)

Codon

Frequency (no. of codon)

Codon

Frequency (no. of codon)

UUU

30.4 (7947)

UCU

19.8 (5158)

UAU

17.4 (4531)

UGU

6.9 (1813)

UUC

11.4 (2984)

UCC

10.3 (2683)

UAC

10.5 (2743)

UGC

5.7 (1496)

UUA

10.7 (2802)

UCA

15.6 (4063)

UAA

1.0 (251)

UGA

1.0 (265)

UUG

17.7 (4611)

UCG

9.8 (2567)

UAG

1.0 (267)

UGG

10.0 (2603)

CUU

31.9 (8314)

CCU

10.6 (2762)

CAU

12.8 (3343)

CGU

11.5 (2996)

CUC

13.4 (3509)

CCC

9.8 (2560)

CAC

7.8 (2034)

CGC

11.5 (3008)

CUA

10.8 (2829)

CCA

13.8 (3610)

CAA

12.6 (3276)

CGA

5.8 (1513)

CUG

18.2 (4741)

CCG

11.5 (3014)

CAG

18.4 (4793)

CGG

6.7 (1747)

AUU

30.7 (8013)

ACU

12.8 (3352)

AAU

23.7 (6193)

AGU

13.1 (3413)

AUC

12.9 (3377)

ACC

14.6 (3803)

AAC

12.1 (3149)

AGC

10.7 (2781)

AUA

23.6 (6166)

ACA

20.1 (5243)

AAA

26.2 (6829)

AGA

13.6 (3546)

AUG

17.9 (4662)

ACG

8.1 (2108)

AAG

21.2 (5533)

AGG

13.1 (3409)

GUU

36.9 (9638)

GCU

21.3 (5567)

GAU

36.7 (9577)

GGU

25.0 (6521)

GUC

12.2 (3193)

GCC

19.6 (5111)

GAC

16.2 (4218)

GGC

18.7 (4884)

GUA

14.7 (3835)

GCA

26.1 (6821)

GAA

25.2 (6578)

GGA

14.9 (3879)

GUG

16.3 (4256)

GCG

16.2 (4239)

GAG

24.9 (6488)

GGG

14.6 (3813)

GC percent information

Coding GC 46.41%

Ist letter GC 54.66%

2nd letter GC 42.27%

3rd letter GC 42.29%