Table 2 Tropheryma whipplei RefSeq codon table contains 88597 CDSs (28006357 codons)
From: Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei
Codon | Usage frequency | No. of codons | Codon | Usage frequency | No. of codons | Codon | Usage frequency | No. of codons | Codon | Usage frequency | No. of codons |
|---|---|---|---|---|---|---|---|---|---|---|---|
TTT | 30.88 | (864933) | TCT | 19.41 | (543618) | TAT | 16.82 | (470999) | TGT | 7.23 | (202580) |
TTC | 11.07 | (309980) | TCC | 9.94 | (278337) | TAC | 10.24 | (286912) | TGC | 6.09 | (170524) |
TTA | 10.79 | (302319) | TCA | 15.06 | (421837) | TAA | 1.00 | (27960) | TGA | 1.11 | (31013) |
TTG | 18.49 | (517778) | TCG | 10.24 | (286768) | TAG | 1.14 | (31981) | TGG | 10.09 | (282675) |
CTT | 32.53 | (910922) | CCT | 9.92 | (277793) | CAT | 12.79 | (358300) | CGT | 11.66 | (326630) |
CTC | 13.10 | (366773) | CCC | 9.27 | (259711) | CAC | 7.92 | (221772) | CGC | 11.85 | (331835) |
CTA | 10.11 | (283081) | CCA | 13.02 | (364568) | CAA | 12.40 | (347268) | CGA | 6.07 | (169892) |
CTG | 18.23 | (510468) | CCG | 12.02 | (336672) | CAG | 17.96 | (503036) | CGG | 6.98 | (195455) |
ATT | 31.40 | (879451) | ACT | 12.53 | (350913) | AAT | 23.82 | (667060) | AGT | 13.41 | (375656) |
ATC | 13.10 | (366940) | ACC | 13.40 | (375396) | AAC | 11.87 | (332502) | AGC | 10.61 | (297274) |
ATA | 23.41 | (655721) | ACA | 17.74 | (496749) | AAA | 26.46 | (741084) | AGA | 13.59 | (380649) |
ATG | 18.25 | (511118) | ACG | 8.30 | (232504) | AAG | 21.39 | (598923) | AGG | 13.55 | (379598) |
GTT | 37.06 | (1037894) | GCT | 21.35 | (597805) | GAT | 37.03 | (1037065) | GGT | 24.77 | (693723) |
GTC | 12.15 | (340402) | GCC | 19.26 | (539448) | GAC | 16.30 | (456523) | GGC | 18.74 | (524935) |
GTA | 14.34 | (401675) | GCA | 26.13 | (731733) | GAA | 25.97 | (727374) | GGA | 14.66 | (410657) |
GTG | 16.39 | (459063) | GCG | 16.86 | (472115) | GAG | 25.54 | (715420) | GGG | 15.16 | (424597) |