Wan S, Li M, Ma F, Liu Z, Zheng W, Zhan J (2019) Genome-wide identification of phospholipase D (PLD) gene family and their responses to low-temperature stress in peach. AIP Conference Proceedings 2110:020011
Article
Google Scholar
Simontacchi M, Galatro A, Ramos-Artuso F, Santa-Maria GE (2015) Plant survival in a changing environment: the role of nitric oxide in plant responses to abiotic stress. Front Plant Sci 6:977
Article
Google Scholar
Bargmann BOR, Munnik T (2006) The role of phospholipase D in plant stress responses. Curr Opin Plant Biol 9:515–522
Article
Google Scholar
Meijer HJ, Munnik T (2003) Phospholipid-based signaling in plants. Annu Rev Plant Biol 54:265–306
Article
Google Scholar
Jacobs AC, Hood I, Boyd KL, Olson PD, Morrison JM, Carson S, Sayood K, Iwen PC, Skaar EP, Dunman PM (2010) Inactivation of phospholipase D diminishes Acinetobacter baumannii pathogenesis. Infect Immun 78:1952–1962
Article
Google Scholar
Morris AJ, Engebrecht J, Frohman MA (1996) Structure and regulation of phospholipase D. Trends Pharmacol Sci 17:182–185
Article
Google Scholar
Tang K, Dong C, Liu J (2016) Genome-wide analysis and expression profiling of the phospholipase D gene family in Gossypium arboretum. Sci China Life Sci 59:130–141
Article
Google Scholar
Munnik T, Irvine RF, Musgrave A (1998) Phospholipid signaling in plants. Biochim Biophys Acta 1389:222–272
Article
Google Scholar
Qin C, Wang X (2002) The Arabidopsis phospholipase D family characterization of a calcium-independent and phosphatidylcholine-selective PLDζ1 with distinct regulatory domains. Plant Physiol 128:1057–1068
Article
Google Scholar
Li G, Lin F, Xue HW (2007) Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLDβ1 in seed germination. Cell Res 17:881–894
Article
Google Scholar
Uesugi Y, Arima J, Iwabuchi M, Hatanaka T (2007) Sensor of phospholipids in Streptomyces phospholipase D. FEBS J 274:2672–2681
Article
Google Scholar
Wang X (2002) Phospholipase D in hormonal and stress signaling. Curr Opin Plant Biol 5:408–414
Article
Google Scholar
Wang X (2005) Regulatory functions of phospholipase D and phosphatidic acid in plant growth, development, and stress responses. Plant Physiol 139:566–573
Article
Google Scholar
Sang Y, Zheng S, Li W, Huang B, Wang X (2001) Regulation of plant water loss by manipulating the expression of phospholipase Dα. Plant J 28:135–144
Article
Google Scholar
Wang C, Zien CA, Afitlhile M, Welti R, Hildebrand DF, Wang X (2000) Involvement of phospholipase D in wound-induced accumulation of jasmonic acid in Arabidopsis. Plant Cell 12:2237–2246
Article
Google Scholar
Bargmann BOR, Laxalt AM, Ter RB, Schouten E, Van LW, Dekker HL, De Koster CG, Haring MA, Munnik T (2006) Le PLDβ1 activation and relocalization in suspension-cultured tomato cells treated with xylanse. The Plant J 45:258–268
Article
Google Scholar
Wang X, Xu L, Zheng L (1994) Cloning and expression of phosphatidylcholine-hydrolyzing phospholipase D from Ricinus communis L. J Biol Chem 269:20312–20317
Article
Google Scholar
Tareq MZ, Bashar KK, Amin MR, Sarker MDH, Moniruzzaman M, Sarker MSA, Islam MS (2019) Nutritional composition of some jute genotypes as vegetables. Intl J Vege Sci 26:1–10
Google Scholar
Islam MM (2019) Varietal advances of jute, kenaf and mesta crops in Bangladesh. Intl J Bioorganic Chem 4:24–41
Article
Google Scholar
Rafiq MZA, Sadat MA, Hoque ABMZ, Hasan MM, Rahman ML, Tareq MZ (2020) Assessment of deshi jute (Corchorus capsularis) seed quality as affected by storage periods. Intl J Bus Soc Sci Rep 8:83–87
Google Scholar
Mollah MSA (2010) Report on the cost of production of jute crop 2008–09. Updating and extension of agriculture cluster plots and survey of cost of production project (UCPSCP). Planning Division, Ministry of Planning pp. 9–10
Zakaria A, Sayed AN (2008) Jute microbiological and biochemical research. Plant Tissue Cul Biotech 18:197–220
Google Scholar
Islam MT, Begum MB, Islam MO (2011) Screening of Jute mutants for salinity tolerance. Intl J Sust Crop Prod 6:6–11
Google Scholar
Sadat MA, Ullah MW, Bashar KK, Hossen QMM, Tareq MZ, Islam MS (2021) Genome-wide identification of F-box proteins in Macrophomina phaseolina and comparison with other fungus. J Genet Eng Biotechnol 19:46
Article
Google Scholar
Dhar P, Ojha D, Kar CS, Mitra J (2018) Differential response of tossa jute (Corchorus olitorius) submitted to water deficit stress. Indust Crops Products 112:141–150
Article
Google Scholar
Ghorai AK, Bhattacharjee AK, Saha S, Rao PV, Bandopadhyay AK (2005) Impact of waterlogging on yield and quality of tossa jute (Corchorus olitorius). Ind J Agron 50(4):320–323
Google Scholar
Yang Z, Dai Z, Lu R, Wu B, Tang Q, Xu Y, Cheng C, Su J (2017) Transcriptome analysis of two species of jute in response to polyethylene glycol (PEG)- induced drought stress. Sci Rep 7:16565
Article
Google Scholar
Islam MS, Saito JA, Emdad EM, Ahmed B, Islam MM, Halim A, Hossen QM, Hossain MZ, Ahmed R, Hossain MS, Kabir SM, Khan MS, Khan MM, Hasan R, Aktar N, Honi U, Islam R, Rashid MM, Wan X, Hou S, Haque T, Azam MS, Moosa MM, Elias SM, Hasan AM, Mahmood N, Shafiuddin M, Shahid S, Shommu NS, Jahan S, Roy S, Chowdhury A, Akhand AI, Nisho GM, Uddin KS, Rabeya T, Hoque SM, Snigdha A, Mortoza S, Matin SA, Islam MK, Lashkar MZ, Zaman M, Yuryev A, Uddin MK, Rahman MS, Haque MS, Alam MM, Khan H, Alam M (2017) Comparative genomics of two jute species and insight into fibre biogenesis. Nature Plants 3:16223
Article
Google Scholar
Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res 35(2):1–3
Google Scholar
Diedhiou CJ, Popova OV, Dietz KJ, Golldack D (2008) The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biol 8:49
Article
Google Scholar
Gasteiger E, Hoogland C, Gattiker A, Wilkins MR, Appel RD, Bairoch A (2010). Protein identification and analysis tools on the ExPASy server: Walker, JM, The Proteomics Protocols Handbook Humana Press Inc, Totowa. 571-607.
Google Scholar
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Google Scholar
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549
Article
Google Scholar
Yang Z, Lu R, Dai Z, Yan A, Tang Q, Cheng C, Xu Y, Yang W, Su J (2017) Salt-stress response mechanisms using de novo transcriptome sequencing of salt-tolerant and sensitive Corchorus spp genotypes. Genes 8:226
Article
Google Scholar
Yang Z, Yan A, Lu R, Dai Z, Tang Q, Cheng C, Xu Y, Su J (2017c) De novo transcriptome sequencing of two cultivated jute species under salinity stress. PLoS One 12:e0185863
Article
Google Scholar
Kabir SMT, Hossain MS, Bashar KK, Honi U, Ahmed B, Emdad EM, Alam MM, Haque MS, Islam MS (2021) Genome-wide identification and expression profiling of AP2/ERF subfamily under stress conditions in dark jute (Corchorus olitorius L.). Indust Crops. Prod 166:113469
Google Scholar
Kanchan M, Ramkumar TR, Himani SJK (2021) Genome-wide characterization and expression profiling of the Phospholipase C (PLC) gene family in three orchids of economic importance. J Genet Eng Biotechnol 19:124
Article
Google Scholar
Elias M, Potocky M, Cvrckova F, Zarsky V (2002) Molecular diversity of phospholipase D in angiosperms. BMC Genomics 3:2
Article
Google Scholar
Liu Q, Zhang C, Yang Y, Hu X (2010) Genome-wide and molecular evolution analyses of the phospholipase D gene family in poplar and grape. BMC Plant Biol 10:117
Article
Google Scholar
Zhao J, Zhou D, Zhang Q, Zhang W (2012) Genomic analysis of phospholipase D family and characterization of GmPLDalphas in soybean (Glycine max). Plant Res 125:569–578
Article
Google Scholar
Tang K, Dong C, Liu J (2016) Genome-wide comparative analysis of the phospholipase D gene families among allotetraploid cotton and its diploid progenitors. PLoS One 11:e0156281
Article
Google Scholar
Lu S, Fadlalla T, Tang S, Li L, Ali O, Li Q, Guo L (2019) Genome-wide analysis of phospholipase D gene family and profiling of phospholipids under abiotic stresses in Brassica napus. Plant Cell Physiol 60:1556–1566
Article
Google Scholar
Uncu AO, Uncu AT, Celik I, Doganlar S, Frary A (2015) A primer to molecular phylogenetic analysis in plants. Critical Rev Plant Sci 34:454–468
Article
Google Scholar
Nagy LG, Merenyi Z, Hegedus B, Baliant B (2020) Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing. Nucleic Acid Res 48:2209–2219
Article
Google Scholar
Hong K, Zhang L, Zhan R, Huang B, Song K, Jia Z (2017) Identification and characterization of phospholipase D genes putatively involved in internal browning of pineapple during postharvest storage. Front Plant Sci 8:913
Article
Google Scholar
Garcia-Angulo A, Merlo MA, Rodriguez ME, Portela-Bens S, Liehr T, Rebordinos L (2019) Genome and phylogenetic analysis of genes involved in the immune system of Solea senegalensis- potential application in aquaculture. Front Genet 10:529
Article
Google Scholar
Ahmed B, Alam M, Hasan F, Emdad EM, Islam S, Rahman N (2020) Jute CDPK genes and their role in stress tolerance and fiber development: a genome-wide bioinformatic investigation of Corchorus capsularis and Corchorus olitorius. Plant Gene 24:100252
Article
Google Scholar
Singh M, Nara U, Kumar A, Choudhary A, Singh H, Thapa S (2021) Salinity tolerance mechanisms and their breeding implications. J Genet Eng Biotechnol 19:173
Article
Google Scholar
Li W, Li M, Zhang W, Welti R, Wang X (2004) The plasma membrane-bound phospholipase Ddelta enhances freezing tolerance in Arabidopsis thaliana. Nat Biotechnol 22:427–433
Article
Google Scholar
Li W, Wang R, Li M, Li L, Wang C, Welti R, Wang X (2008) Differential degradation of extraplastidic and plastidic lipid during freezing and post-freezing recovery in Arabidopsis thaliana. J Biol Chem 283:461–468
Article
Google Scholar
Gayatri G, Agurla S, Raghavendra AS (2013) Nitric oxide in guard cells as an important secondary messenger during stomatal closure. Front Plant Sci 4:425
Article
Google Scholar
Angelini J, Vosolsobe S, Skupa P, Ho AYY, Bellinvia E, Valentova O, Marc J (2018) Phospholipase Ddelta assists to cortical microtubule recovery after salt stress. Protoplasma 255:1195–1204
Article
Google Scholar
Roy A, Bandyopadhyay A, Mahapatra AK, Ghosh SK, Singh NK, Bansal KC, Koundal KR, Mohapatra T (2006) Evaluation of genetic diversity in jute (Corchorus spp) using STMS, ISSR and RAPD markers. Plant Breed 125:292–297
Article
Google Scholar