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Table 2 List of used SCoT and CBDP primers and their calculated informativeness parameters on 91 investigated Triticum and Aegilops

From: Molecular diversity analysis in hexaploid wheat (Triticum aestivum L.) and two Aegilops species (Aegilops crassa and Aegilops cylindrica) using CBDP and SCoT markers

Primer

Sequence

TB

PB

PIC

Rp

MI

SCoT-2

CAACAATGGCTACCACCC

18

18

0.39

12.04

7.09

SCoT-3

CAACAATGGCTACCACCG

16

16

0.33

8.84

5.29

SCoT-5

CAACAATGGCTACCACGA

16

16

0.26

7.56

4.17

SCoT-6

CAACAATGGCTACCACGC

19

19

0.31

9.69

5.95

SCoT-7

CAACAATGGCTACCACGG

19

19

0.34

9.03

6.42

SCoT-12

ACGACATGGCGACCAACG

14

14

0.37

10.13

5.21

SCoT-13

ACGACATGGCGACCATCG

14

14

0.32

7.93

2.55

SCoT-14

ACGACATGGCGACCACGC

16

16

0.37

10.00

3.70

SCoT-15

ACGACATGGCGACCGCGA

14

14

0.37

14.46

5.22

SCoT-16

CCATGGCTACCACCGGCC

16

16

0.37

9.76

5.90

SCoT-17

CATGGCTACCACCGGCCC

16

16

0.35

11.78

5.63

SCoT-18

ACCATGGCTACCACCGCG

17

17

0.38

10.84

6.43

SCoT-19

GCAACAATGGCTACCACC

21

21

0.36

12.59

7.49

SCoT-20

AACCATGGCTACCACCGC

23

23

0.31

10.79

7.06

SCoT-21

CACCATGGCTACCACCAT

23

23

0.31

11.12

7.19

Mean

17.47

17.47

0.34

10.44

5.69

CBDP-1

TGAGCACGATCCAAT AGC

19

19

0.29

4.69

5.47

CBDP-2

TGAGCACGATCCAATAAT

20

20

0.28

5.65

5.65

CBDP-3

TGAGCACGATCCAAT ACC

21

21

0.31

5.45

6.51

CBDP-4

TGAGCACGATCCAAT AAG

15

15

0.36

6.27

5.33

CBDP-5

TGAGCACGATCCAAT CTA

16

16

0.33

4.12

5.24

CBDP-6

TGAGCACGATCCAAT CAG

15

15

0.36

4.74

5.33

CBDP-7

TGAGCACGATCCAAT CGA

22

22

0.36

6.52

7.96

CBDP-8

TGAGCACGATCCAAT CGG

25

25

0.33

6.95

8.15

CBDP-9

TGAGCACGATCCAAT GAT

23

23

0.29

5.09

6.78

CBDP-10

TGAGCACGATCCAAT GTT

15

15

0.32

4.69

4.75

CBDP-11

TGAGCACGATCCAAT TGC

18

18

0.28

3.82

5.07

CBDP-12

TGAGCACGATCCAATATA

26

26

0.31

7.00

8.07

CBDP-13

TGAGCACGATCCAATGAG

20

20

0.29

5.08

5.84

CBDP-14

TGAGCACGATCCAATGCG

22

22

0.33

5.59

7.36

CBDP-15

TGAGCACGATCCAATTGA

21

21

0.29

4.52

6.05

Mean

19.87

19.87

0.31

5.35

6.24

  1. TB, PB, PIC, Rp, and MI indicate total amplified bands, polymorphic amplified bands, polymorphism information content, resolving power and marker index parameters, respectively