Table 3 Cooperative modules found in the promoter of the hub genes
Module | Elements | Domain | Strand | Matrix similarity | Distance to next element | Common to | p value |
|---|---|---|---|---|---|---|---|
1 | P$DOFF | DOF-C2C2 zinc finger domain | + | 0.85(min. 0.96) | 164–173 bp | 19 matches in 15 seq. (88%), 18 non-overlapping | 1.40355e−06 |
P$GTBX | Trihelix domain | + | 0.85(min. 0.86) | ||||
2 | P$HMGF | AT-hook | + | 0.85(min. 0.88) | 178–187 bp | 20 matches in 15 seq. (88%), 17 non-overlapping | 1.61627e−06 |
P$DOFF | DOF-C2C2 –zinc finger domain | + | 0.85(min. 0.96) | ||||
3 | P$AHBP | HD-ZIP | − | 0.85(min. 0.86) | 59–68 bp | 22 matches in 15 seq. (88%), 19 non-overlapping | 1.32362e−05 |
P$SEF4 | structure of DNA-binding domain not specified | − | 0.85(min. 0.91) | ||||
4 | P$AHBP | HD-ZIP | + | 0.85(min. 0.86) | 173–182 bp | 34 matches in 16 seq. (94%), 29 non-overlapping | 2.11074e−05 |
P$CAAT | heterotrimeric transcription factor | − | 0.85(min. 0.86) | ||||
5 | P$AHBP | HD-ZIP | + | 0.85(min. 0.86) | 154–163 bp | 28 matches in 15 seq. (88%), 24 non-overlapping | 2.29321e−05 |
P$GTBX | Trihelix domain | + | 0.85(min. 0.85) | ||||
6 | P$HMGF | AT-hook | − | 0.85 (min. 0.90 | 77–86 bp | 22 matches in 15 seq. (88%), 22 non-overlapping | 2.37645e−05 |
P$MYBL | MYB domain | − | 0.85(min. 0.85) |