Whole genome sequence and comparative genomics analysis of multidrug-resistant Staphylococcus xylosus NM36 isolated from a cow with mastitis in Basrah city

Al-Tameemi, Hassan M.; Al-Hraishawi, Husam; Al-Hejjaj, Murtakab Y.; Abdulah, Noor S.; Alrafas, Haider R.; Dawood, Yessar A.

doi:10.1186/s43141-023-00606-6

Journal of Genetic Engineering and Biotechnology

Table 3 S. xylosus NM36 genome analysis for genes involved in regulation and cell signaling—quorum sensing and biofilm formation. The annotation was based on the protein domain database [38,39,40,41]

From: Whole genome sequence and comparative genomics analysis of multidrug-resistant Staphylococcus xylosus NM36 isolated from a cow with mastitis in Basrah city

#	Contig	Start	Stop	Strand	Length (bp)	Function
1.	JARUHN010000002.1	32,591	32,127	-	465	Transcriptional regulator TcaR (transcriptional inhibitors of the ica locus) [28]
2.	JARUHN010000003.1	71,220	73,370	+	2151	Transcriptional regulator of biofilm formation (AraC/XylS family) [24]
3.	JARUHN010000004.1	40,722	39,415	-	1308	Putative bifunctional autolysin Atl [9]
4.	JARUHN010000007.1	17,600	18,022	+	423	Putative Atl autolysin transcription regulator [9]
5.	JARUHN010000007.1	22,546	18,119	-	4428	Bifunctional autolysin Atl/N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)/endo-beta-N-acetylglucosaminidase (EC 3.2.1.96) [9]
6.	JARUHN010000003.1	24,247	23,873	-	375	Staphylococcal accessory regulator A (SarA) [7]
7.	JARUHN010000021.1	2983	2300	-	684	Response regulator SaeR (Staphylococcus exoprotein expression protein R) [42]
8.	JARUHN010000012.1	75,289	76,059	+	771	RNA polymerase sigma factor SigB [32]
9.	JARUHN010000021.1	14,393	15,622	+	1230	Polysaccharide intercellular adhesin (PIA) biosynthesis N-glycosyltransferase IcaA (EC 2.4.-.-) [60]
		15,891	16,742	+	852	Polysaccharide intercellular adhesin (PIA) biosynthesis deacetylase IcaB [60]
		16,735	17,802	+	1068	Polysaccharide intercellular adhesin (PIA) biosynthesis protein IcaC [60]
		18,351	18,926	+	576	Biofilm operon ica ABCD HTH-type negative transcriptional regulator IcaR [60]
10.	JARUHN010000001.1	352,989	353,711	+	723	Staphylococcal respiratory response protein SrrA [43, 59]
10.	JARUHN010000001.1	353,680	355,473	+	1794	Staphylococcal respiratory transmembrane histidine kinase protein SrrB [43, 59]
11.	JARUHN010000009.1	14,624	13,908	-	717	agr—accessory gene regulator A (response regulator) [8]
		15,932	14,637	-	1296	agr—accessory gene regulator C (sensor histidine kinase) [8]
		16,667	16,098	-	570	agr—accessory gene regulator B [8]
12.	JARUHN010000008.1	75,944	75,171	-	774	GTP-sensing transcriptional pleiotropic repressor CodY [49]
13.	JARUHN010000002	125,802	127,553	+	1752	Autolysis histidine kinase LytS [55]
13.	JARUHN010000002	127,556	128,320	+	765	Autolysis response regulator LytR [55]
14.	JARUHN010000003.1	94,251	93,808	-	444	Transcriptional regulator MgrA (regulator of autolytic activity) [61]
15.	JARUHN010000001.1	414,891	415,553	+	663	Putative response regulator ArlR
15.	JARUHN010000001.1	415,550	416,905	+	1356	Two-component system histidine kinase ArlS

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