Table 2 The selected gene targets of newly identified miRNAs
From: Identification of conserved miRNAs and their targets in Jatropha curcas: an in silico approach
miRNA Acc. | Target Acc. | (E) | Target description | Target function |
|---|---|---|---|---|
jcu-miR5277 | AT5G24120.1 | 1.5 | Sigma factor E | Female gametophyte development |
AT1G30860.1 | 1.5 | RING/U-box superfamily protein | Protein modification | |
AT4G13720.1 | 2.5 | Inosine triphosphate pyrophosphatase family protein | Avoiding chromosomal lesions. | |
AT5G61420.2 | 2.5 | MYB28 | Defense against herbivorous insects | |
AT1G08970.3 | 2.5 | Nuclear factor Y | Flowering, and gibberellic acid pathways | |
AT1G06520.1 | 2.5 | glycerol-3-phosphate acyltransferase 1 | Biosynthesis of triglycerides, phosphatidic acids | |
jcu-miR9741 | AT1G16070.2 | 2.5 | AtTLP8 | Stimulus from a fungus |
AT5G04870.1 | 3 | Calcium dependent protein kinase 1 | Signal transduction | |
AT5G50950.3 | 3 | FUMARASE 2 | Photosynthesis to cold | |
AT5G20240.1 | 3 | K-box transcription factor family protein | Transcription factor | |
jcu-miR7121 | AT3G15620.1 | 2 | DNA photolyase family protein | Repair of UV radiation-induced DNA damage |
AT1G73960.2 | 2.5 | TBP-associated factor 2 | Transcription factor | |
AT5G35750.1 | 3 | Histidine kinase 2 | Responses and abscisic acid (ABA) signaling in abiotic stresses | |
jcu-miR1534 | AT5G59260.1 | 2 | Concanavalin A-like lectin protein kinase family protein | Defense response to bacterium |
AT2G34640.1 | 3 | Plastid transcriptionally active 12 | Plastid gene expression | |
AT3G20710.1 | 3 | F-box family protein | Growth and development, auxin signaling | |
jcu-miR6149-3p | AT5G03180.1 | 1.5 | RING/U-box superfamily protein | Protein modification. |
AT2G44950.1 | 2.5 | Histone mono-ubiquitination 1 | Defense, control of seed dormancy and germination | |
AT4G16780.1 | 3 | Homeobox protein 2 | Metabolism and Lateral root formation | |
AT1G21360.1 | 3 | glycolipid transfer protein 2 | Lipid metabolism | |
AT5G03540.1 | 3 | exocyst subunit exo70 family protein A1 | Cell growth and organ morphogenesis | |
jcu-miR11155c-3p | AT4G34060.2 | 2.5 | Demeter-like protein 3 | DNA repair |
AT2G32510.1 | 2.5 | Mitogen-activated protein kinase kinase kinase 17 | ABA signal during abiotic stresses | |
AT3G05630.1 | 2.5 | Phospholipase D P2 | Diacylglycerol synthesis | |
AT5G22420.1 | 2.5 | Fatty acid reductase 7 | Lipid metabolism | |
AT4G24230.5 | 3 | acyl-CoA-binding domain 3 | Phosphotidic acid biosynthesis | |
AT4G36870.1 | 3 | BEL1-like homeodomain 2 | Lipid metabolism | |
AT3G15730.1 | 3 | phospholipase D alpha 1 | Phosphatidic acids metabolism | |
jcu-miR4249 | AT1G77020.1 | 2.5 | DNAJ heat shock N-terminal domain-containing protein | Protein modification |
AT2G32430.1 | 3 | Galactosyltransferase family protein | Protein modification | |
AT1G72470.1 | 3 | Exocyst subunit exo70 family protein D1 | Exocytosis protein transport | |
AT1G74910.3 | 3 | ADP-glucose pyrophosphorylase family protein | Regulation of L-ascorbic acid biosynthetic process | |
jcu-miR7805-3p | AT3G51770.1 | 3 | Tetratricopeptide repeat (TPR)-containing protein | Ethylene biosynthesis, post- embryonic root development |
AT2G21220.1 | 3 | SAUR-like auxin-responsive protein family | Response to auxin | |
AT3G50310.1 | 3 | MAPKKK20 | Abscisic acid (ABA) responses, abiotic stresses | |
jcu-miR8786 | AT5G18410.3 | 3 | PIR, KLK, PIR121, SRA1, PIRP, transcription activators | Development |
AT5G52830.1 | 3 | WRKY27, | Disease resistance, hormonal responses | |
AT4G12610.1 | 3 | RAP74 | Transcriptional regulation | |
AT1G31550.2 | 3 | GDSL-like Lipase/Acylhydrolase superfamily protein | Lipid metabolism | |
jcu-miR3520-5p | AT3G09560.1 | 2 | Lipin family protein | Biosynthesis of diacylglycerol, lipid metabolism |
AT5G65800.1 | 2.5 | ACC synthase 5 | Ethylene biosynthesis, fruit ripening | |
AT5G55490.1 | 3 | GEX1 | Gametophyte development, pollen maturation. | |
AT1G02720.1 | 3 | GATL5 | Metabolism | |
jcu-miR5658 | AT5G16560.1 | 2 | Homeodomain-like superfamily protein | Transcription factor |
AT3G13930.1 | 2 | Dihydrolipoamide acetyltransferase | Fatty acid biosynthesis | |
AT5G59450.1 | 2 | GRAS family transcription factor | Growth and development | |
AT2G45880.1 | 2.5 | Beta-amylase 7 | Transcription factor | |
AT4G34810.1 | 3 | SAUR-like auxin-responsive protein family | Response to auxin | |
jcu-miR2112-3p | AT4G16860.1 | 2.5 | TIR-NBS-LRR class family protein | Metabolism |
AT1G74030.1 | 3 | Enolase 1 | Metabolism | |
AT1G73460.1 | 3 | Protein kinase superfamily protein | Transcription factor | |
AT1G51720.1 | 3 | Amino acid dehydrogenase family protein | Metabolism |