Table 1 Name, retrotransposon source, direction, GenBank accession number, position and sequences of LTR primers, and name and sequences of ISSR primers
Primer | RTN name and orientation | GenBank accession number | Position | Sequence (5′-3′) |
|---|---|---|---|---|
IRAP and REMAP | ||||
Sukkula | Sukkula→ | AY054376 | 4301–4326 | GATAGGGTCGCATCTTGGGCGTGAC |
Nikkita | Nikita→ | AY078073 AY078074 AY078075 | 1–22 | CGCATTTGTTCAAGCCTAAACC |
LTR6149 | BARE-1→ | Z17327 | 1993–2012 | CTCGCTCGCCCACTACATCAACCGCGTTTATT |
LTR6150 | BARE-1← | Z17327 | 439–418 | CTGGTTCGGCCCATGTCTATGTATCCACACATGTA |
3′LTR | BARE-1→ | Z17327 | 2112–2138 | TGTTTCCCATGCGACGTTCCCCAACA |
5′LTR1 | BARE-1← | Z17327 | 1–26 | TTGCCTCTAGGGCATATTTCCAACA |
5′LTR2 | BARE-1← | Z17327 | 338–314 | ATCATTCCCTCTAGGGCATAATTC |
ISSR | ||||
ISSR3 | (AC) 8TG | |||
ISSR6 | (ACTG) 4 | |||
ISSR42 | (CA) 7T | |||