Fig. 1
From: Genome sequencing reveals existence of SARS-CoV-2 B.1.1.529 variant in Egypt
A Phylogenetic analysis of the omicron variant isolated in this case report. The isolate (arrow) is grouped inside the 21K sequences of SARS-CoV-2 virus. B structural visualization of the spike glycoprotein with aa changes identified in the query sequences shown as colored balls. Spike glycoprotein (PDB: 6acj, EM 4.2 Angstrom) in complex with host cell receptor ACE2 (green ribbon). The variations displayed in structure (nearest residue if in loop/termini region): A67V H69del V70del(69) T95I G142D V143del Y144del(143) Y145del(143) N211del L212I ins214EPE G339D V367F S371L S373P S375F S477N T478K E484A Q493R G496S Q498R N501Y Y505H T547K D614G H655Y N679K(674) P681H(674) D796Y N856K Q954H N969K L981F