Analysing the impact of the two most common SARS-CoV-2 nucleocapsid protein variants on interactions with membrane protein in silico

Journal of Genetic Engineering and Biotechnology

Table 2 Residues involved in hydrogen bonds and salt bridges between the wild type N protein and the M protein

Bond type	M protein atom	M protein residue	M protein residue position	N protein atom	N protein residue	N protein residue position	Distance
Hydrogen bond	OD2	ASP	3	OG	SER	318	2.83
Hydrogen bond	ND2	ASN	41	O	SER	310	2.81
Hydrogen bond	ND2	ASN	41	O	ALA	311	2.88
Hydrogen bond	NE	ARG	42	O	PHE	315	2.83
Hydrogen bond	NH2	ARG	42	O	PHE	315	2.69
Hydrogen bond	NH2	ARG	42	O	GLY	316	2.67
Hydrogen bond	NE	ARG	44	OE1	GLN	306	3.17
Hydrogen bond	NH2	ARG	44	OE1	GLN	306	2.69
Hydrogen bond	NH2	ARG	44	OG	SER	312	2.77
Hydrogen bond	NE	ARG	101	OE1	GLN	390	2.8
Hydrogen bond	NH1	ARG	101	OE1	GLN	386	2.67
Hydrogen bond	NH1	ARG	101	OE1	GLN	389	2.77
Hydrogen bond	NH2	ARG	101	OE1	GLN	389	2.75
Hydrogen bond	NH2	ARG	101	OE1	GLN	390	2.8
Hydrogen bond	NH1	ARG	158	O	LEU	339	2.67
Salt bridge	NZ	LYS	162	OD1	ASP	341	2.69
Salt bridge	NZ	LYS	162	OD2	ASP	348	2.56