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Table 2 Residues involved in hydrogen bonds and salt bridges between the wild type N protein and the M protein

From: Analysing the impact of the two most common SARS-CoV-2 nucleocapsid protein variants on interactions with membrane protein in silico

Bond type M protein atom M protein residue M protein residue position N protein atom N protein residue N protein residue position Distance
Hydrogen bond OD2 ASP 3 OG SER 318 2.83
Hydrogen bond ND2 ASN 41 O SER 310 2.81
Hydrogen bond ND2 ASN 41 O ALA 311 2.88
Hydrogen bond NE ARG 42 O PHE 315 2.83
Hydrogen bond NH2 ARG 42 O PHE 315 2.69
Hydrogen bond NH2 ARG 42 O GLY 316 2.67
Hydrogen bond NE ARG 44 OE1 GLN 306 3.17
Hydrogen bond NH2 ARG 44 OE1 GLN 306 2.69
Hydrogen bond NH2 ARG 44 OG SER 312 2.77
Hydrogen bond NE ARG 101 OE1 GLN 390 2.8
Hydrogen bond NH1 ARG 101 OE1 GLN 386 2.67
Hydrogen bond NH1 ARG 101 OE1 GLN 389 2.77
Hydrogen bond NH2 ARG 101 OE1 GLN 389 2.75
Hydrogen bond NH2 ARG 101 OE1 GLN 390 2.8
Hydrogen bond NH1 ARG 158 O LEU 339 2.67
Salt bridge NZ LYS 162 OD1 ASP 341 2.69
Salt bridge NZ LYS 162 OD2 ASP 348 2.56