Table 3 Putative genes for ABC transporters and their two-component systems detected in the FN1 metagenome and their taxonomic affiliation
Putative genes | Taxonomic affiliation |
|---|---|
ABC transporters | |
 ko:K02006 cbiO; cobalt/nickel transport system ATP-binding protein | Listeria monocytogenes; Zooshikella ganghwensis; Azospirillum sp. (strain B510); Raoultella sp. BIGb0138; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] | Azospirillum sp. (strain B510); Raoultella sp. BIGb0138; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K02012 afuA; iron(III) transport system substrate-binding protein | Mesorhizobium denitrificans; Mesorhizobium sp. YM1C-6-2 |
 ko:K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K02018 modB; molybdate transport system permease protein | Listeria monocytogenes; Zooshikella ganghwensis; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K02020 modA; molybdate transport system substrate-binding protein | Mesorhizobium denitrificans; Mesorhizobium sp. YM1C-6-2 |
 ko:K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K02040 pstS; phosphate transport system substrate-binding protein | Mesorhizobium denitrificans |
 ko:K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Raoultella sp. BIGb0138; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein | Mesorhizobium denitrificans; Mesorhizobium sp. YM1C-6-2 |
 ko:K05776 modF; molybdate transport system ATP-binding protein | Listeria monocytogenes; Zooshikella ganghwensis; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] | Listeria monocytogenes; Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.-] | Listeria monocytogenes; Zooshikella ganghwensis; Azospirillum sp. (strain B510); Raoultella sp. BIGb0138; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K10824 nikE; nickel transport system ATP-binding protein [EC:7.2.2.11] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K11602 mntB; manganese transport system permease protein | Microbacterium sp. cf046 |
 ko:K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K11607 sitB; manganese/iron transport system ATP-binding protein | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Raoultella sp. BIGb0138; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K11962 urtD; urea transport system ATP-binding protein | Zooshikella ganghwensis; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K11963 urtE; urea transport system ATP-binding protein | Zooshikella ganghwensis; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] | Listeria monocytogenes; Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K15555 ssuB; sulfonate transport system ATP-binding protein [EC:3.6.3.-] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; |
 ko:K15558 ophH; phthalate transport system ATP-binding protein | Chelatococcus sp. CO-6 |
 ko:K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:3.6.3.-] | Azospirillum sp. (strain B510); Raoultella sp. BIGb0138; Chelatococcus sp. CO-6 |
 ko:K15579 nrtD; nitrate/nitrite transport system ATP-binding protein | Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K15587 nikD; nickel transport system ATP-binding protein [EC:7.2.2.11] | Listeria monocytogenes; Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K18895 iroC; ATP-binding cassette, subfamily B, salmochelin/enterobactin exporter | Azospirillum sp. (strain B510); Chelatococcus sp. CO-6 |
 ko:K19340 nosF; Cu-processing system ATP-binding protein | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein | Mesorhizobium denitrificans; Mesorhizobium sp. YM1C-6-2 |
 ko:K23184 fecE; ferric citrate transport system ATP-binding protein [EC:7.2.2.18] | Zooshikella ganghwensis; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01; Jiella endophytica |
 ko:K23188 fepC; ferric enterobactin transport system ATP-binding protein [EC:7.2.2.17] | Zooshikella ganghwensis; Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
Two-component systems | |
 ko:K02040 pstS; phosphate transport system substrate-binding protein | Mesorhizobium denitrificans |
 ko:K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB | Burkholderiales bacterium |
 ko:K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR | Burkholderiales bacterium |
 ko:K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR | Burkholderiales bacterium |
 ko:K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE | Nocardioides sp.; Burkholderiales bacterium |
 ko:K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] | Nocardioides sp.; Alcaligenes xylosoxydans xylosoxydans; Streptomyces sp. SLBN-118 |
 ko:K11330 nrsR; two-component system, OmpR family, Ni(II)-responsive and/or redox-responsive regulator NrsR | Burkholderiales bacterium |
 ko:K11521 manR; two-component system, OmpR family, manganese sensing response regulator | Burkholderiales bacterium |
 ko:K11602 mntB; manganese transport system permease protein | Microbacterium sp. cf046 |
 ko:K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5] | Zooshikella ganghwensis; Azospirillum sp. (strain B510); Chelatococcus sp. CO-6; Alteromonadaceae bacterium 2052S.S.stab0a.01 |
 ko:K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] | Nocardioides sp.; Streptomyces sp. SLBN-118 |
 ko:K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX | Burkholderiales bacterium; Chelatococcus sp. CO-6 |
 ko:K19611 fepA; ferric enterobactin receptor | Gemmatimonadales bacterium |