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Table 3 Maximum likelihood fits using the Kimura 2-parameter model among 25 different nucleotide sequences for the combined locus of Ycf1-ndhF genes

From: ycf1-ndhF genes, the most promising plastid genomic barcode, sheds light on phylogeny at low taxonomic levels in Prunus persica

Model Invariant(+I) R Freq(A) Freq(T) Freq(C) Freq(G) r(AT) r(AC) r(AG) r(TA) r(TC) r(TG) r(CA) r(CT) r(CG) r(GA) r(GT) r(GC)
T92+G+I 0.66 1.18 0.339 0.339 0.161 0.161 0.072 0.034 0.093 0.072 0.093 0.034 0.072 0.195 0.034 0.195 0.072 0.034
HKY+G+I 0.66 1.18 0.34 0.338 0.161 0.161 0.072 0.034 0.093 0.072 0.093 0.034 0.072 0.195 0.034 0.195 0.072 0.034
GTR+G+I 0.66 1.19 0.34 0.338 0.161 0.161 0.057 0.044 0.094 0.057 0.089 0.038 0.093 0.186 0.031 0.199 0.08 0.031
TN93+G+I 0.66 1.18 0.34 0.338 0.161 0.161 0.072 0.034 0.096 0.072 0.09 0.034 0.072 0.188 0.034 0.202 0.072 0.034
K2+G+I 0.69 1.71 0.25 0.25 0.25 0.25 0.046 0.046 0.158 0.046 0.158 0.046 0.046 0.158 0.046 0.158 0.046 0.046
  1. I against evolutionarily invariable, R revealing estimated values of transition/transversion bias, Freq nucleotide frequencies, and r substitutions for each nucleotide pair