Table 5 Predicted conserved domains in identified upregulated Brassica rapa sequences with their positions under contrast ETMC
S.N. | B. rapa accession | No. of conserved domains | From | To | Predicted domain (short name) |
|---|---|---|---|---|---|
1. | Bra006830 | 1 | 26 | 485 | p450 superfamily |
2. | Bra035148 | 1 | 147 | 205 | WRKY |
3. | Bra017561 | 1 | 178 | 235 | WRKY |
4. | Bra015272 | 1 | 59 | 155 | GlrX-like_plant |
5. | Bra036260 | 2 | 96 4 | 212 78 | GST_C_Phi GST_N_Phi |
6. | Bra004982 | 2 | 78 261 | 174 282 | ANK ZnF_C3H1 |
7. | Bra000064 | 2 | 316 151 | 371 205 | WRKY WRKY |
8. | Bra037006 | 2 | 159 11 | 430 45 | STK_BAK1_like PLN00113 superfamily |
9. | Bra031073 | 1 | 12 | 522 | K_oxygenase superfamily |
10. | Bra002283 | 1 | 22 | 122 | Stellacyanin |
11. | Bra017085 | 2 | 21 328 | 266 483 | Nodulin-like 2A0111 superfamily |
12. | Bra024269 | 1 | 36 | 327 | Secretory_peroxidase |
13. | Bra012806 | 2 | 12 185 | 217 251 | Syntaxin SNARE superfamily |
14. | Bra033568 | 1 | 6 | 349 | UbiH |
15. | Bra022772 | 1 | 118 | 371 | PP2Cc |
16. | Bra000141 | 1 | 74 | 353 | STKc_IRAK |
17. | Bra022813 | 1 | 3 | 463 | p450 superfamily |
18. | Bra028635 | 1 | 35 | 294 | Phi_1 |
19. | Bra026986 | 1 | 1 | 450 | K_oxygenase superfamily |
20. | Bra037520 | 6 | 737 620 163 426 239 257 | 905 835 257 573 285 319 | NAD_binding_6 NOX_Duox_like_FAD_NADP NADPH_Ox Ferric_reduct EFh EF-hand_7 |
21. | Bra028436 | 1 | 26 | 317 | Secretory_peroxidase |
22. | Bra004768 | 1 | 28 | 88 | Toxin_3 |
23. | Bra021101 | 1 | 20 | 270 | Lectin_legume_LecRK_Arcelin_ConA |
24. | Bra029933 | 1 | 27 | 330 | Secretory_peroxidase |
25. | Bra021184 | 1 | 37 | 252 | AUX_IAA |
26. | Bra019332 | 1 | 1 | 515 | PLN02611 |
27. | Bra011299 | 1 | 183 | 241 | WRKY |
28. | Bra018970 | 1 | 133 | 386 | SMC_N superfamily |
29. | Bra018969 | 1 | 38 | 515 | Glyco_hydro_1 superfamily |
30. | Bra023099 | 1 | 30 | 327 | Secretory_peroxidase |
31. | Bra014037 | 1 | 21 | 103 | TRX_family |
32. | Bra034754 | 2 | 74 21 | 306 61 | Glyco_hydro_19 ChtBD1_GH19_hevein |
33. | Bra012551 | 1 | 1 | 463 | PLN02196 |
34. | Bra030416 | 3 | 34 593 411 | 353 857 499 | Malectin_like STKc_IRAK PLN00113 superfamily |
35. | Bra011536 | 1 | 57 | 369 | WD40 |
36. | Bra034848 | 2 | 5 463 | 441 742 | Glycosyltransferase_GTB_type superfamily WD40 |
37. | Bra003789 | 1 | 29 | 560 | PLN02786 |
38. | Bra039130 | 1 | 10 | 278 | SPFH_like_u4 |
39. | Bra012938 | 1 | 99 | 157 | AP2 |
40. | Bra036316 | 1 | 41 | 272 | chitinase_glyco_hydro_19 |
41. | Bra001422 | 2 | 36 209 | 241 275 | Syntaxin SNARE superfamily |
42. | Bra000775 | 1 | 81 | 165 | HPS_like |