Genome-wide investigation of SnRK2 gene family in two jute species: Corchorus olitorius and Corchorus capsularis

Journal of Genetic Engineering and Biotechnology

Table 1 Chromosomal locations of validated CoSnRK2 and CcSnRK2 genes

Sl. No	Gene name	Protein ID	Chromosome/scaffold	Scaffold	Chromosome/ scaffolD position	Contig	Contig position
a. *Corchorus olitorius*
1	CoSnRK2.3	COLO4_11351	LG5	scf7180001685701	160,113–162,639	contig14721	58,976–61,502
2	CoSnRK2.4a	COLO4_04355	scf7180001681417	scf7180001681417	17,566–21,079	contig11423	17,566–21,079
3	CoSnRK2.4b	COLO4_11768	LG5	scf7180001685702	262,907–265,304	contig14773	223,636–226,033
4	CcSnRK2.5	COLO4_06686	scf7180001685069	scf7180001685069	42,836–45,718	contig12876	26,118–29,000
5	CoSnRK2.6	COLO4_11725	LG5	scf7180001685702	66,575–69,499	contig14773	27,304–30,228
6	CoSnRK2.7	COLO4_27287	LG1	scf7180001685868	1,963,664–1,966,276	contig19559	81,066–83,678
7	CoSnRK2.8	COLO4_12024	scf7180001685704	scf7180001685704	555,262–558,012	contig14830	12,736–15,486
b. *Corchorus capsularis*
1	CcSnRK2.3	CCACVL1_26314	LG5	scf7180000535437	10,170,301–10,172,677	contig14484	7701–10,077
2	CcSnRK2.4a	CCACVL1_16888	LG2	scf7180000535334	6,446,492–6,449,084	contig11152	62,104–64,696
3	CcSnRK2.4b	CCACVL1_06930	scf7180000534926	scf7180000534926	38,039–41,920	contig08274	31,143–35,024
4	CcSnRK2.5	CCACVL1_00490	scf7180000534656	scf7180000534656	201,997–205,942	contig01234	1559–5504
5	CcSnRK2.6	CCACVL1_16921	LG2	scf7180000535334	6,621,296–6,624,224	contig11154	93,932–96,860
6	CcSnRK2.8	CCACVL1_26729	LG5	scf7180000535437	13,375,253–13,382,337	contig14552	35,479–42,563
7	CcSnRK2.7	CCACVL1_05979	scf7180000534755	scf7180000534755	89,489–90,928	contig07866	315–1754