Table 2 In silico study of 17 shattering genes identified in B. napus with their closest Arabidopsis homologs and sequence feature
Gene name | Gene locus | Chr. no. | Closest Arabidopsis homologs | Protein length | Mol. wt. (kda) | PI | Introns |
|---|---|---|---|---|---|---|---|
BrnS1 | GSBRNA2T00098954001 | A07 | SHP1/AGL1 | 348aa | 39.77 | 9.21 | 8 |
BrnS2 | GSBRNA2T00105875001 | C06 | SHP1/AGL1 | 248aa | 28.41 | 9.11 | 6 |
BrnS3 | GSBRNA2T00132708001 | A05 | SHP2/AGL5 | 244aa | 28.00 | 9.21 | 5 |
BrnS4 | GSBRNA2T00113594001 | A03 | FUL/AGL8 | 241aa | 27.43 | 9.37 | 7 |
BrnS5 | GSBRNA2T00094717001 | A09 | FUL/AGL8 | 241aa | 27.49 | 9.31 | 7 |
BrnS6 | GSBRNA2T00086507001 | C02 | FUL/AGL8 | 241aa | 27.45 | 9.36 | 7 |
BrnS7 | GSBRNA2T00070429001 | C07 | ALC/AT5G67110/BHLH73 | 216aa | 23.51 | 9.03 | 4 |
BrnS8 | GSBRNA2T00063470001 | C02 | ALC/AT5G67110/BHLH73 | 98aa | 11.12 | 10.0 | 5 |
BrnS9 | GSBRNA2T00153545001 | C03 | IND/EDA33/GT10 | 178aa | 20.36 | 7.93 | 1 |
BrnS10 | GSBRNA2T00112126001 | A03 | IND/EDA33/GT10 | 182aa | 20.60 | 6.06 | 0 |
BrnS11 | GSBRNA2T00150558001 | A10 | NAC/At5g22380/MWD9.18 | 285aa | 32.25 | 6.91 | 2 |
BrnS12 | GSBRNA2T00085330001 | C05 | NAC/At5g22380/MWD9.18 | 286aa | 32.37 | 7.60 | 2 |
BrnS13 | GSBRNA2T00069510001 | A10 | BLH9/RPL/BLR/LSN/PNY | 578aa | 62.49 | 7.12 | 4 |
BrnS14 | GSBRNA2T00088804001 | C02 | BLH9/RPL/BLR/LSN/PNY | 575aa | 61.96 | 6.94 | 4 |
BrnS15 | GSBRNA2T00064043001 | C08 | PG/At1g45015 | 419aa | 43.97 | 8.83 | 3 |
BrnS16 | GSBRNA2T00052454001 | A09 | PG/At1g45015 | 418aa | 43.88 | 8.83 | 3 |
BrnS17 | GSBRNA2T00089606001 | A08 | PG/At1g45015 | 420aa | 43.85 | 8.39 | 3 |