Table 5 Secondary structure prediction of plant catalases using SOPMA
From: Plant catalase in silico characterization and phylogenetic analysis with structural modeling
Organism | Accession number | Alpha helix | Beta turn | Random coil | Extended strand |
|---|---|---|---|---|---|
Vitis vinifera | AAL83720 | 27.03% (133) | 7.7% (38) | 48.78% (240) | 16.46% (81) |
Vigna radiata | ADZ455551 | 27.44% (135) | 7.93% (39) | 49.39% (243) | 15.24% (75) |
Populus deltoides | CAI439481 | 29.88% (147) | 7.32% (36) | 48.37% (238) | 14.43% (71) |
Ziziphus jujuba | AET975641 | 28.46% (140) | 7.52% (37) | 49.19% (242) | 14.84% (73) |
Prunus persica | CAD429091 | 27.85% (137) | 7.32% (36) | 48.98% (241) | 15.85% (78) |
Phyllanthus emblica | ATO983111 | 17.96% (29) | 12.35% (21) | 40.49% (69) | 30% (51) |
Nicotiana plumbaginifolia | CAA854261 | 27.03% (133) | 6.91% (34) | 50.81% (250) | 15.24% (75) |
Bruguiera gymnorhiza | ADC956291 | 28.86% (142) | 7.93% (39) | 47.15% (232) | 16.06% (79) |
Arabidopsis thaliana | CAA177731 | 27.64% (136) | 7.93% (39) | 48.78% (240) | 15.65% (77) |
Raphanus sativus | AAF717421 | 26.42% (130) | 7.93% (39) | 50.81% (250) | 14.84% (73) |
Brassica juncea | AAD179341 | 28.25% (139) | 7.52% (37) | 48.58% (239) | 15.65% (77) |
Arabis alpina | KFK301471 | 28.66% (141) | 7.93% (39) | 48.37% (238) | 15.04% (74) |
Musa acuminata | SIW589631 | 20.93% (54) | 10.47% (27) | 47.29% (122) | 21.32% (55) |
Solanum tuberosum | AAR140522 | 27.16% (129) | 8% (38) | 50.11% (238) | 14.74% (70) |
Saccharum | AIU994821 | 25.20% (124) | 7.72% (38) | 49.8% (245) | 17.28% (85) |
Saccharum spontaneum | AIU994861 | 25.81% (127) | 7.72% (38) | 49.59% (244) | 16.87% (83) |
Saccharum arundinaceum | AIU994841 | 28.05% (138) | 7.72% (38) | 48.17% (237) | 16.06% (79) |
Oryza sativa | BAA342041 | 27.44% (135) | 8.13% (40) | 47.76% (235) | 16.67% (82) |
Triticum aestivum | BAA130681 | 28.25% (139) | 7.52% (37) | 47.36% (233) | 16.87% (83) |
Festuca arundinacea | CAG239201 | 26.63% (131) | 7.93% (39) | 49.39% (243) | 16.06% (79) |
Capsicum annuum | AAF347181 | 29.07% (143) | 6.91% (34) | 14.02% (69) | 50% (246) |
Solanum melongena | CAA506441 | 26.83% (132) | 6.71% (33) | 16.06% (79) | 50.41% (248) |
Solanum lycopersicum | AAA341451 | 28.86% (142) | 8.54% (42) | 15.65% (77) | 46.95% (231) |
Oryza meridionalis | BAA816791 | 25% (144) | 7.64% (44) | 16.49% (95) | 50.87% (293) |
Oryza rufipogon | BAA816741 | 34.83% (31) | 8.99% (8) | 14.61% (13) | 41.57% (37) |
Oryza glaberrima | BAA816811 | 26.19% (22) | 8.33% (7) | 16.67% (14) | 48.81% (41) |
Oryza barthii | BAA816801 | 27.06% (23) | 7.06% (6) | 16.47% (14) | 49.41% (42) |