Plant catalase in silico characterization and phylogenetic analysis with structural modeling

Nene, Takio; Yadav, Meera; Yadav, Hardeo Singh

doi:10.1186/s43141-022-00404-6

Journal of Genetic Engineering and Biotechnology

Table 2 Physiochemical characterization of protein sequences of plant catalases as revealed by ProtParam

From: Plant catalase in silico characterization and phylogenetic analysis with structural modeling

S. no.	Accession number	Source organisms	No. of amino acids	Molecular weight	Theoretical pI	Total number of negatively charged residues (Asp + Glu)	Total number of positively charged residues (Arg + Lys)	Instability index	Aliphatic index	Grand average of hydropathicity (GRAVY)
1	NP001304079	Vigna radiata	514	58955.50	6.69	63	59	38.76	73.81	−0.488
2	BAA02755	Vigna radiata var. radiata	525	60026.27	6.82	64	61	40.12	74.70	−0.462
3	ADZ45556	Vigna radiata	514	59000.14	6.58	64	59	38.33	73.30	−0.493
4	ADZ45555	Vigna radiata	515	58990.10	6.58	64	59	38.70	73.30	−0.492
5	CAI43948	Populus deltoides	519	59759.30	6.30	65	57	38.87	71.97	−0.479
6	AET97564	Ziziphus jujuba	492	57012.28	6.78	61	58	36.67	71.34	−0.586
7	CAD42908	Prunus persica	516	59502.85	6.67	65	61	41.93	70.66	−0.563
8	ATO98311	Phyllanthus emblica	206	23309.00	7.95	19	20	37.11	72.43	−0.176
9	CAA85426	Nicotiana plumbaginifolia	527	60803.50	6.68	62	58	38.75	72.73	−0.436
10	ADC95629	Bruguiera gymnorhiza	522	60289.99	6.99	62	60	39.96	72.30	−0.521
11	CAB80226	Arabidopsis thaliana	527	60803.50	6.68	62	58	38.75	72.73	−0.436
12	CAA17773	Arabidopsis thaliana	522	59978.31	6.56	64	59	39.65	72.15	−0.508
13	CAA45564	Arabidopsis thaliana	522	59932.31	6.67	63	59	39.65	74.02	−0.484
14	AAF71742	Raphanus sativus	518	59445.81	6.67	63	59	40.80	70.04	−0.521
15	AAD17934	Brassica juncea	492	56828.17	6.63	62	58	41.11	70.14	−0.571
16	AAD17936	Brassica juncea	492	56946.31	6.63	62	58	39.93	70.14	−0.569
17	KFK30147	Arabis alpina	515	59241.56	7.15	63	62	42.87	71.59	−0.529
18	AAD17935	Brassica juncea	492	56915.30	6.90	61	59	41.58	69.53	−0.581
19	AAD17933	Brassica juncea	496	57411.82	6.75	62	59	41.81	68.97	−0.574
20	SIW58963	Musa acuminata	289	32993.15	5.60	35	25	33.43	75.57	−0.248
21	AAR14052	Solanum tuberosum	509	58871.71	6.76	62	59	36.25	72.81	−0.496
22	CAA85424	Nicotiana plumbaginifolia	527	60359.75	6.73	61	58	42.60	72.54	−0.431
23	CAB56850	Prunus persica	519	60050.61	6.44	66	60	38.94	72.33	−0.525
24	CAD42909	Prunus persica	516	59586.90	6.83	66	63	43.98	70.68	−0.582
25	NP 001268098	Vitis vinifera	515	59395.13	6.60	64	60	36.37	71.53	−0.487
26	AAL83720	Vitis vinifera	516	59439.22	6.61	64	60	36.52	72.54	−0.462
27	AIU99487	Saccharum hybrid cultivar ROC22	529	61053.51	7.23	61	60	35.78	70.96	−0.459
28	AIU99488	Saccharum hybrid cultivar ROC22	529	61049.50	7.23	61	60	34.80	71.70	−0.454
29	AIU99481	Saccharum spontaneum	522	60096.68	6.65	62	57	34.06	70.06	−0.475
30	AIU99480	Saccharum spontaneum	522	60137.74	6.76	62	58	33.13	71.36	−0.489
31	AIU99484	Saccharum arundinaceum	524	60310.91	6.65	63	58	33.58	71.83	−0.462
32	AIU99485	Saccharum spontaneum	522	60074.72	6.76	61	57	33.26	69.67	−0.476
33	AIM43584	Saccharum hybrid cultivar Yacheng05-179	533	61366.87	6.79	63	59	33.08	71.16	−0.464
34	AIU99486	Saccharum spontaneum	522	60105.77	6.65	62	57	33.82	70.79	−0.461
35	AIU99482	Saccharum hybrid cultivar ROC22	529	61091.49	6.89	63	60	33.32	72.25	−0.461
36	AKO90140	Oryza sativa	514	59001.53	6.69	63	59	28.94	72.67	−0.476
37	BAA34204	Oryza sativa Japonica Group	492	56575.00	6.49	62	56	31.71	70.73	−0.521
38	BAA05494	Oryza sativa Japonica Group	492	56518.89	6.47	62	56	29.80	70.35	−0.519
39	ADF83496	Triticum aestivum	519	59739.15	6.35	66	59	36.54	70.08	−0.520
40	BAA13068	Triticum aestivum	519	59662.62	6.44	65	59	37.70	70.27	−0.522
41	CAG23920	Festuca arundinacea	521	59642.71	6.13	68	58	35.71	68.71	−0.551
42	BAA34205	Oryza sativa Japonica Group	492	56806.00	6.93	60	58	34.56	70.73	−0.583
43	BAA34714	Oryza sativa	514	58477.81	7.44	59	59	38.40	65.66	−0.570
44	NP001311603	Capsicum annuum	516	59027.52	6.89	61	59	41.91	71.24	−0.456
45	BAF91369	Capsicum annuum	517	59149.21	6.89	61	59	42.05	71.30	−0.443
46	AAF34718	Capsicum annuum	517	59102.64	7.11	61	60	42.02	71.12	−0.439
47	CAA50644	Solanum melongena	519	59612.46	6.49	65	60	38.12	72.52	−0.462
48	AAA80650	Solanum tuberosum	519	59490.24	6.46	65	60	40.91	67.65	−0.536
49	AAA34145	Solanum lycopersicum	522	59953.61	6.46	65	60	39.89	70.25	−0.489
50	CAA85470	Solanum tuberosum	525	60195.17	6.58	65	61	38.90	70.23	−0.501
51	BAA06232	Oryza sativa	513	58948.73	6.78	65	62	40.97	68.42	−0.521
52	CAA43814	Oryza sativa Indica Group	524	60255.59	6.77	66	63	39.88	68.66	−0.496
53	BAA81679	Oryza meridionalis	119	13672.55	4.55	21	11	39.18	75.55	−0.396
54	BAA81678	Oryza meridionalis	119	13672.55	4.55	21	11	39.18	75.55	−0.396
55	BAA81677	Oryza sativa f. spontanea	123	13890.66	4.53	20	10	40.11	68.37	−0.396
56	BAA81676	Oryza rufipogon	116	13488.20	4.70	19	11	38.85	66.55	−0.474
57	BAA81675	Oryza rufipogon	116	13488.20	4.70	19	11	38.85	66.55	−0.474
58	BAA81674	Oryza rufipogon	121	13958.73	4.72	20	12	38.55	67.02	−0.469
59	BAA81673	Oryza rufipogon	121	13958.73	4.72	20	12	38.55	67.02	−0.469
60	BAA81672	Oryza sativa	120	13504.30	4.84	20	13	39.12	71.67	−0.436
61	BAA81671	Oryza sativa Indica Group	131	14831.73	4.86	21	14	37.90	72.37	−0.401
62	BAA81670	Oryza sativa Japonica Group	90	10322.46	4.57	19	10	39.95	63.89	−0.700
63	BAA81682	Oryza glaberrima	119	13476.86	4.86	20	13	43.60	69.83	−0.492
64	BAA81681	Oryza glaberrima	117	13291.63	4.74	20	12	44.90	71.03	−0.463
65	BAA81680	Oryza barthii	115	13113.42	4.95	19	12	42.53	71.39	−0.492

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