Table 6 3D structure evaluation by different online tools
From: Determination of deleterious single-nucleotide polymorphisms of human LYZ C gene: an in silico study
Name | PROCHECK score | ERRAT quality score | Verify_3D | PROVE_score |
|---|---|---|---|---|
Wild | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 98.4 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |
T88N | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 99.2 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |
I74T | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 97.6 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.8% |
F75I | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 97.6 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |
D67H | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 98.4 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.5% |
W82R | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 99.2 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |
D85H | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 99.2 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |
R80C | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 99.2 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |
R116S | Out of 8 evaluations • 1: Errors • 4: Warning • 3: Pass | 98.4 | 100.00% of amino acids have 3D-1D average score > = 0.2 Pass | Total buried outlier atoms of protein: 1.3% |