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Table 6 3D structure evaluation by different online tools

From: Determination of deleterious single-nucleotide polymorphisms of human LYZ C gene: an in silico study

Name PROCHECK score ERRAT quality score Verify_3D PROVE_score
Wild Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
98.4 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%
T88N Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
99.2 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%
I74T Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
97.6 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.8%
F75I Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
97.6 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%
D67H Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
98.4 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.5%
W82R Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
99.2 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%
D85H Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
99.2 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%
R80C Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
99.2 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%
R116S Out of 8 evaluations
• 1: Errors
• 4: Warning
• 3: Pass
98.4 100.00% of amino acids have 3D-1D average score > = 0.2
Pass
Total buried outlier atoms of protein: 1.3%