Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages

Journal of Genetic Engineering and Biotechnology

Table 4 Structural similarity (Dali Z-scores)/root mean squared deviation (RMSD) matrix of the protein homologs from DCL protein subfamilies in A. thaliana

	DCL2 AEE73925.1		*A. protothecoides*		DCL3 AEE77842.1		DCL4 NP001190348		DCL1 AE202177.1		DCL3 NP001154662.2		DCL4 NP197532.3		DCL4 AED92830
	Z scores	RMSD (Å)	Z scores	RMSD (Å)	Z scores	RMSD (Å)	Z scores	RMSD (Å)	Z scores	RMSD (Å)	Z scores	RMSD (Å)	Z scores	RMSD (Å)	Z scores	RMSD (Å)
DCL2 AEE73925.1	60.1	0.0
*Auxenochlorella protothecoides*	31.4	3.8	59.3	0.0
DCL3 AEE77842.1	17.3	8.3	14.9	16.8	61.0	0.0
DCL4 NP001190348	18.6	7.6	13.6	18.2	29.2	11.7	60.4	0.0
DCL1 AE202177.1	21.4	13.4	16.8	17.0	30.8	25.6	35.7	28.6	62.1	0.0
DCL3 NP001154662.2	19.5	8.1	15.6	19.8	39.0	6.8	36.9	16.8	40.4	18.5	59.1	0.0
DCL4 NP197532.3	16.9	6.9	16.6	18.0	29.9	11.8	36.0	4.2	38.3	19.3	43.0	10.8	61.2	0.0
DCL4 AED92830	16.9	6.9	16.6	18.0	29.9	11.6	36.0	4.2	38.3	19.1	43.0	10.8	61.2	0.0	61.2	0.0