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Table 4 Determination of MspI sites and fragment sizes for promoter regions

From: In silico analysis of promoter regions to identify regulatory elements in TetR family transcriptional regulatory genes of Mycobacterium colombiense CECT 3035

Names of corresponding promoter regions

Nucleotide positions of MspI sites

Fragment sizes (between 40 and 220 bp)

Pro-MCOL_RS11660

Multiple (17, 64, 163, 223, 336, 476, 484, 692, 706, 742, 827, 838, 886, 937)

47, 99, 60, 113, 140, 208, 85, 48, 51

Pro-MCOL_RS11090

Multiple (108, 130, 446, 504, 586, 656, 665, 707, 839, 867, 995)

58, 82, 70, 42, 132, 128

Pro-MCOL_RS08825

Multiple (21, 143, 163, 258, 343, 362, 379, 439, 653, 691, 752, 768, 953, 995)

122, 95, 85, 60, 214, 61, 185, 42

Pro-MCOL_RS08145

Multiple (27, 107, 206, 269, 388, 475, 499, 727, 764, 774, 849, 885, 962)

80, 99, 63, 119, 87, 75, 77

Pro-MCOL_RS06375

Multiple (50, 175, 239, 299, 428, 460, 557, 591, 595, 618, 735, 739, 750, 769, 866, 982, 994)

125, 64, 60, 129, 97, 117, 97, 116

Pro-MCOL_RS04605

Multiple (126, 157, 180, 329, 574, 613, 634, 837, 907, 985)

149, 203, 70, 78

Pro-MCOL_RS03660

Multiple (12, 116, 173, 213, 253, 426, 473, 540, 648, 654, 707, 857)

104, 57, 40, 173, 47, 67, 108, 53, 150

Pro-MCOL_RS02905

Multiple (21, 92, 137, 251, 610, 818, 828, 931)

71, 45, 114, 208, 103

Pro-MCOL_RS02170

Multiple (57, 204, 224, 261, 308, 416, 435, 471, 563, 592, 604, 733, 874, 965)

147, 47, 108, 92, 129, 141, 91

Pro-MCOL_RS26110

Multiple (14, 140, 168, 241, 545, 571, 653, 665, 868)

126, 73, 82, 203

Pro-MCOL_RS07580

Multiple (66, 165, 204, 255, 273, 461, 489, 516, 594, 642, 724, 758)

99, 51, 188, 78, 48, 82

Pro-MCOL_RS05990

Multiple (295, 312, 327, 347, 906, 968, 985)

62

Pro-MCOL_RS23260

Multiple (91, 97, 115, 295, 302, 391, 450, 550, 557, 627, 687, 709, 745, 821, 953)

180, 89, 59, 100, 70, 60, 76, 132

Pro-MCOL_RS22650

Multiple (5, 79, 86, 225, 239, 318, 330, 348, 435, 457, 553, 624, 640, 716, 765, 844, 888)

74, 139, 79, 87, 96, 71, 76, 49, 44

Pro-MCOL_RS17010

Multiple (5, 23, 33, 40, 130, 195, 247, 403, 543, 585, 680, 688, 716, 724, 851, 910)

90, 65, 52, 156, 140, 42, 95, 127, 59

Pro-MCOL_RS03070

Multiple (80, 158, 170, 209, 222, 341, 388, 415, 509, 577, 604, 706, 785, 923, 955, 965)

78, 119, 47, 94, 68, 102, 79, 138

Pro-MCOL_RS04305

Multiple (11, 149, 165, 170, 409, 804, 886, 906, 922, 964)

138, 82, 42

Pro-MCOL_RS22305

Multiple (175, 236, 248, 302, 554, 616, 636, 729, 782, 946)

61, 54, 62, 93, 53, 164

Pro-MCOL_RS20235

Multiple (10, 14, 20, 47, 380, 402, 571, 641, 820, 979)

169, 70, 179, 159

Pro-MCOL_RS25615

Multiple (0, 22, 92, 142, 148, 184, 254, 290, 310, 377, 851, 876)

70, 50, 67

Pro-MCOL_RS15085

Multiple (13, 18, 105, 127, 200, 223, 306, 369, 497, 553, 565, 992)

87, 73, 83, 63, 128, 56

Pro-MCOL_RS13375

Multiple (58, 83, 227, 242, 295, 329, 393, 422, 553, 618, 652, 861, 884, 893)

144, 53, 64, 131, 65, 209