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Table 2 Number of SNPs and InDels identified in three Philippine mango species

From: Genome-wide SNP and InDel analysis of three Philippine mango species inferred from whole-genome sequencing

Reference genome

Variant

Huania

Pahob

Carabaoc

Alphonso

SNPs

3,826,194

2,918,359

2,355,481

Insertions

261,867

236,119

199,857

Deletions

265,002

238,285

199,929

Total

4,353,063

3,392,763

2,755,267

Tommy Atkins

SNPs

3,777,813

2,990,377

2,448,630

Insertions

242,643

223,650

197,129

Deletions

256,831

235,890

206,721

Total

4,277,287

3,449,917

2,852,480

  1. aM. odorata, bM. altissima, cM. indica