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Table 3 Tropheryma whipplei str. Twist 808 CDS’ (266294 codons) codons, frequency per thousand, and in bracket number of codons

From: Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei

Codon Frequency (no. of codon) Codon Frequency (no. of codon) Codon Frequency (no. of codon) Codon Frequency (no. of codon)
UUU 30.5 (8121) UCU 19.7 (5246) UAU 17.2 (4590) UGU 7.3 (1938)
UUC 11.5 (3066) UCC 10.1 (2690) UAC 10.5 (2790) UGC 6.1 (1626)
UUA 10.9 (2906) UCA 15.4 (4100) UAA 0.9 (250) UGA 1.1 (281)
UUG 18.4 (4894) UCG 9.9 (2643) UAG 1.0 (277) UGG 10.2 (2710)
CUU 31.8 (8461) CCU 10.6 (2826) CAU 12.8 (3409) CGU 11.6 (3079)
CUC 13.1 (3492) CCC 9.8 (2620) CAC 7.9 (2111) CGC 11.6 (3085)
CUA 10.6 (2832) CCA 13.5 (3588) CAA 12.5 (3316) CGA 6.0 (1585)
CUG 18.3 (4871) CCG 11.6 (3095) CAG 18.4 (4889) CGG 6.9 (1832)
AUU 30.6 (8157) ACU 12.7 (3392) AAU 23.7 (6313) AGU 13.1 (3497)
AUC 13.2 (3503) ACC 14.2 (3776) AAC 11.9 (3179) AGC 10.7 (2855)
AUA 23.3 (6209) ACA 19.6 (5223) AAA 26.2 (6970) AGA 13.6 (3613)
AUG 18.0 (4784) ACG 8.2 (2176) AAG 21.2 (5642) AGG 13.2 (3516)
GUU 36.7 (9774) GCU 21.3 (5660) GAU 36.3 (9679) GGU 24.9 (6640)
GUC 12.2 (3247) GCC 19.4 (5172) GAC 16.1 (4283) GGC 18.8 (5007)
GUA 14.7 (3916) GCA 26.1 (6939) GAA 25.2 (6702) GGA 14.8 (3952)
GUG 16.6 (4431) GCG 16.3 (4340) GAG 24.7 (6586) GGG 14.8 (3942)
GC percent information Coding GC 46.46% Ist letter GC 54.59% 2nd letter GC 42.30% 3rd letter GC 42.48%