Table 3 Tropheryma whipplei str. Twist 808 CDS’ (266294 codons) codons, frequency per thousand, and in bracket number of codons
From: Codon usage studies and epitope-based peptide vaccine prediction against Tropheryma whipplei
Codon | Frequency (no. of codon) | Codon | Frequency (no. of codon) | Codon | Frequency (no. of codon) | Codon | Frequency (no. of codon) |
|---|---|---|---|---|---|---|---|
UUU | 30.5 (8121) | UCU | 19.7 (5246) | UAU | 17.2 (4590) | UGU | 7.3 (1938) |
UUC | 11.5 (3066) | UCC | 10.1 (2690) | UAC | 10.5 (2790) | UGC | 6.1 (1626) |
UUA | 10.9 (2906) | UCA | 15.4 (4100) | UAA | 0.9 (250) | UGA | 1.1 (281) |
UUG | 18.4 (4894) | UCG | 9.9 (2643) | UAG | 1.0 (277) | UGG | 10.2 (2710) |
CUU | 31.8 (8461) | CCU | 10.6 (2826) | CAU | 12.8 (3409) | CGU | 11.6 (3079) |
CUC | 13.1 (3492) | CCC | 9.8 (2620) | CAC | 7.9 (2111) | CGC | 11.6 (3085) |
CUA | 10.6 (2832) | CCA | 13.5 (3588) | CAA | 12.5 (3316) | CGA | 6.0 (1585) |
CUG | 18.3 (4871) | CCG | 11.6 (3095) | CAG | 18.4 (4889) | CGG | 6.9 (1832) |
AUU | 30.6 (8157) | ACU | 12.7 (3392) | AAU | 23.7 (6313) | AGU | 13.1 (3497) |
AUC | 13.2 (3503) | ACC | 14.2 (3776) | AAC | 11.9 (3179) | AGC | 10.7 (2855) |
AUA | 23.3 (6209) | ACA | 19.6 (5223) | AAA | 26.2 (6970) | AGA | 13.6 (3613) |
AUG | 18.0 (4784) | ACG | 8.2 (2176) | AAG | 21.2 (5642) | AGG | 13.2 (3516) |
GUU | 36.7 (9774) | GCU | 21.3 (5660) | GAU | 36.3 (9679) | GGU | 24.9 (6640) |
GUC | 12.2 (3247) | GCC | 19.4 (5172) | GAC | 16.1 (4283) | GGC | 18.8 (5007) |
GUA | 14.7 (3916) | GCA | 26.1 (6939) | GAA | 25.2 (6702) | GGA | 14.8 (3952) |
GUG | 16.6 (4431) | GCG | 16.3 (4340) | GAG | 24.7 (6586) | GGG | 14.8 (3942) |
GC percent information | Coding GC 46.46% | Ist letter GC 54.59% | 2nd letter GC 42.30% | 3rd letter GC 42.48% | |||