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Journal of Genetic Engineering and Biotechnology

Table 2 Average RSCU values of the codons of the HEV YDR and comparison with the RSCU values of its natural hosts

From: Decoding the codon usage patterns in Y-domain region of hepatitis E viruses

AA

Codon

HEV

Human

Rabbit

Mongoose

Pig

Wild boar

Camel

Monkey

Phe (F)

UUU

1.16

1.48

1.3

1.56

1.44

1.28

1.11

1.33

UUC

0.84

0.52

0.7

0.44

0.56

0.72

0.89

0.67

Leu (L)

UUA

0.39

0.28

0.17

0.42

0.28

0.07

0.57

0.33

UUG

0.81

0.77

0.24

0.84

0.65

0.79

0.7

1

CUU

1.7

1.86

2.45

1.26

2.13

1.78

1.72

2

CUC

1.91

1.66

1.84

2

1.61

1.78

1.91

1.67

CUA

0.37

0.29

0.07

0.11

0.42

0.34

0

0.33

CUG

0.81

1.13

1.23

1.37

0.92

1.25

1.09

0.67

Ile (I)

AUU

1.19

1.12

1.36

0.62

1.2

1.04

1.29

1.85

AUC

1.24

1.09

1.15

1.23

0.99

0.99

1.24

0.92

AUA

0.57

0.79

0.5

1.15

0.81

0.97

0.48

0.23

Val (V)

GUU

1.37

1.29

1.05

1.1

1.29

1.07

1.83

2.59

GUC

1.59

1.3

1.66

1.65

1.29

1.51

1.88

1.41

GUA

0.1

0.25

0.22

0

0.22

0.13

0.05

0

GUG

0.94

1.17

1.08

0.25

1.2

1.29

0.24

0

Ser (S)

UCU

1.19

1.72

1.72

2.13

1.67

1.73

1.85

1.41

UCC

2.15

1.48

0.97

1.13

1.3

1.39

0.96

1.76

UCA

0.81

0.89

0.92

1

1.07

0.57

0.59

0.71

UCG

0.74

0.79

1.26

0.63

0.85

1.14

0.96

0.35

AGU

0.59

0.51

0.38

0.5

0.58

0.88

0.89

2.33

AGC

0.52

0.6

0.76

0.63

0.53

0.28

0.74

0.67

Pro (P)

CCU

1.66

1.44

0.92

1.89

1.45

1.21

1.49

0.67

CCC

0.8

0.78

1.54

0.67

0.65

0.77

1.02

0.33

CCA

0.86

0.88

0.55

0.44

0.97

0.98

0.68

2

CCG

0.69

0.9

0.99

1

0.94

1.03

0.81

1.25

Thr (T)

ACU

1.12

1.5

1.32

1.83

1.36

1.41

1.52

0.75

ACC

1.87

1.27

1.48

1.17

1.38

1.37

1.33

0

ACA

0.54

0.85

0.77

0.42

0.84

0.88

0.76

1.6

ACG

0.47

0.38

0.42

0.58

0.42

0.34

0.38

1.4

Ala (A)

GCU

1.33

0.98

1.39

1.13

0.93

1.34

1.22

0.8

GCC

2.02

1.59

1.39

1.33

1.63

1.28

1.37

0.2

GCA

0.43

0.68

0.32

0.6

0.81

0.71

0.75

1.41

GCG

0.21

0.75

0.91

0.93

0.64

0.66

0.67

1.76

Tyr (Y)

UAU

0.91

0.99

1.02

0.89

1.03

1.06

1.47

1.17

UAC

1.09

1.01

0.98

1.11

0.97

0.94

0.53

0.83

His (H)

CAU

1.2

1.34

1.17

1.24

1.34

1.48

1.26

1.14

CAC

0.8

0.66

0.83

0.76

0.66

0.52

0.74

0.86

Gln (Q)

CAA

0.36

0.27

0.07

0.19

0.31

0.43

0.27

0.33

CAG

1.64

1.73

1.93

1.81

1.69

1.57

1.73

1.67

Arn (N)

AAU

0.87

0.99

0.96

0.89

0.89

1.1

0.55

0

AAC

1.13

1.01

1.04

1.11

1.11

0.9

1.45

2

Lys (K)

AAA

0.23

0.8

1.3

0.78

0.72

0.63

0.48

1.14

AAG

1.77

1.2

0.7

1.22

1.28

1.38

1.52

0.86

Asp (D)

GAU

0.98

1.03

1.34

1.3

1.17

0.89

1.13

1

GAC

1.02

0.97

0.66

0.7

0.83

1.11

0.87

1

Glu (E)

GAA

0.37

0.38

0.67

0.36

0.36

0.38

0.52

0.4

GAG

1.63

1.62

1.33

1.64

1.64

1.62

1.48

1.6

Cys (C)

UGU

0.29

0.67

0.43

0.53

0.59

0.4

0.64

1.2

UGC

1.71

1.33

1.57

1.47

1.41

1.6

1.36

0.8

Arg (R)

CGU

1.88

2.16

1.92

2.12

1.92

1.73

2.19

1.41

CGC

1.65

1.35

2.47

1.76

1.7

1.81

1.27

2.82

CGA

0.3

0.34

0.24

0.35

0.26

0.3

0.42

0.35

CGG

1.35

1.22

0.67

1.29

1.1

1.18

1.13

0.71

AGA

0.34

0.3

0

0.35

0.31

0.3

0.21

0

AGG

0.48

0.64

0.71

0.12

0.7

0.68

0.78

0.71

Gly (G)

GGU

1.24

1.4

1.65

1.52

1.13

0.92

1.8

0.86

GGC

1.79

1.8

2.32

1.81

1.91

2.11

1.45

2.29

GGA

0.23

0.19

0.03

0.57

0.26

0.18

0.35

0.29

GGG

0.74

0.62

0

0.1

0.7

0.79

0.41

0.57

  1. The preferred codons are indicated in bold
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