Decoding the codon usage patterns in Y-domain region of hepatitis E viruses

Journal of Genetic Engineering and Biotechnology

Table 1 Nucleotide composition analysis of YDR of hepatitis E viruses (%)

Nucleotide	HEV	Human	Rabbit	Mongoose	Pig	Wild boar	Camel	Monkey
A	18.841	19.319	18.127	18.705	19.532	19.108	18.910	18.960
C	30.169	28.022	29.816	28.287	28.048	28.391	27.662	28.287
U	26.631	27.654	27.777	27.777	27.485	27.014	28.671	29.510
G	24.357	25.003	24.277	25.229	24.933	25.485	24.755	23.241
A1	22.698	22.057	21.844	21.253	21.997	21.990	22.660	22.477
C1	26.665	25.688	27.013	25.993	25.792	25.908	21.100	24.770
U1	21.505	21.403	20.387	21.559	21.246	21.037	21.100	21.100
G1	30.131	30.851	30.784	31.192	30.963	31.062	31.467	31.651
A2	24.349	24.077	23.037	23.853	24.045	23.888	23.713	23.853
C2	28.387	28.186	28.134	27.981	28.175	28.158	27.941	27.522
U2	27.408	28.147	29.001	28.440	28.216	28.228	28.033	27.981
G2	19.853	19.588	19.826	19.724	19.562	19.724	20.312	20.642
A3	9.480	11.821	9.531	11.009	12.554	11.440	10.366	10.550
C3	36.452	30.193	34.301	30.886	30.177	31.108	30.275	32.568
U3	30.978	33.414	33.944	33.333	32.992	31.779	36.880	39.449
G3	23.088	24.570	22.222	24.770	24.275	25.670	22.477	17.431
AU	45.472	46.973	45.904	46.482	47.617	46.122	47.581	48.47
GC	54.526	53.025	54.093	53.516	52.981	53.876	54.417	51.528
GC3	59.54	54.763	56.523	55.656	54.452	56.778	52.752	49.999