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Table 2 Ka/Ks analysis for StU-box genes

From: Genome-wide identification of StU-box gene family and assessment of their expression in developmental stages of Solanum tuberosum

Duplicated pair

Duplicate type

Ka

Ks

Ka/Ks

Positive selection

StU-box 3/10

Tandem

2.9689

2.2984

0.7742

No

StU-box 3/11

Tandem

2.8414

2.2924

0.8068

No

StU-box 6/8

Tandem

3.5823

2.0766

0.5797

No

StU-box 6/9

Tandem

2.01

1.8276

1.103

Yes

StU-box 8/9

Tandem

2.5007

1.8512

0.7403

No

StU-box 7/12

Segment

3.2122

2.87

1.118

Yes

StU-box 10/11

Tandem

2.9291

2.451

0.8367

No

StU-box 13/10

Tandem

2.9633

2.5061

0.8457

No

StU-box 13/11

Segment

4.9234

2.3356

2.108

Yes

StU-box 21/24

Tandem

2.7183

2.3542

0.8661

No

StU-box 28/34

Segment

2.7192

2.946

1.0834

Yes

StU-box 30/31

Segment

2.3015

1.8702

0.8126

No

AtPUB1/2

Tandem

1.8911

3.4452

0.5489

No

AtPUB2/3

Tandem

1.8561

3.2687

0.5678

No

AtPUB3/1

Tandem

2.2704

3.1686

0.7165

No

AtPUB13/14

Tandem

3.2942

2.4233

1.3594

Yes

AtPUB27/28

Tandem

2.5159

2.6878

0.9361

No

AtPUB39/40

Tandem

2.2177

2.3145

0.958

No

AtPUB49/50

Tandem

2.6139

2.5701

1.017

Yes

AtPUB50/51

Tandem

2.6399

2.867

0.9208

No

AtPUB49/51

Tandem

3.8226

3.0968

1.2344

Yes

AtPUB57/58

Tandem

4.9102

4.8888

1.004

Yes

AtPUB63/64

segment

1.91

3.6343

0.5255

No

CcU-box 8/9

Tandem

2.4468

2.9408

0.832

No

CcU-box 13/14

Tandem

2.5589

2.7006

0.9475

No

CcU-box 18/19

Segment

2.1265

2.7881

0.7627

Yes

CcU-box 26/27

Tandem

3.6119

3.8546

0.937

No

CcU-box 29/30

Tandem

2.5775

2.786

0.9251

No

CcU-box 43/44

Tandem

4.824

2.6361

1.83

Yes

GhU-box 5/6

Tandem

3.3199

3.084

1.0765

Yes

GhU-box 27/28

Tandem

0.7533

0.749

1.006

Yes

GhU-box 39/40

Tandem

3.094

3.1003

0.997

No

GhU-box 41/42

Tandem

2.006

2.125

0.944

No

GhU-box 44/45

Tandem

2.9385

2.5408

1.1566

Yes

GhU-box 49/50

segment

2.4743

2.3595

1.0487

Yes

GhU-box 60/61

Tandem

2.2918

2.2

1.041

Yes

GhU-box 68/69

Tandem

1.789

1.4728

1.214

Yes

GhU-box 92/93

segment

2.6536

2.5873

1.0256

Yes

OsU-box 11/12

Tandem

1.7712

1.12

1.58

Yes

OsU-box 44/45

Tandem

1.8283

1.7828

1.0255

Yes

OsU-box 40/41

Tandem

2.588

3.8332

0.6752

No

OsU-box 62/63

Tandem

2.6172

4.7782

0.5477

No

OsU-box 61/63

Tandem

0.7552

0.698

1.081

Yes

OsU-box 61/62

Tandem

3.3893

3.3116

1.0235

Yes

OsU-box 63/64

Tandem

2.2926

2.1725

1.0553

Yes

OsU-box 57/58

Tandem

4.4363

3.561

1.246

Yes

OsU-box 67/68

Tandem

2.7202

2.9911

0.9094

No

SlU-box 57/58

Tandem

2.8944

1.6806

1.7222

Yes

SlU-box 31/32

Tandem

2.3652

2.6092

0.9065

No

SlU-box 2/3

Segment

0.071

0.0499

1.423

Yes

SlU-box 2/4

Tandem

3.0671

2.3017

1.3325

Yes

SlU-box 2/5

Tandem

2.4453

2.1782

1.1226

Yes

SlU-box 3/4

Tandem

3.0011

2.4993

1.2008

Yes

SlU-box 3/5

Tandem

2.7222

1.1462

2.3749

Yes

SlU-box 4/5

Tandem

2.1477

2.1559

0.9962

No

SlU-box 6/7

Segment

1.6731

2.1477

0.779

Yes

TaU-box 70/71

Tandem

3.3179

3.3289

0.996

No

TaU-box 96/97

Tandem

3.009

3.015

0.998

No

TaU-box 107/108

Tandem

2.91

2.4663

1.1799

Yes

TaU-box 116/117

Tandem

4.2555

3.6081

1.1794

Yes

TaU-box 122/123

Tandem

4.67

4.5236

1.0332

Yes

TaU-box 154/155

Tandem

3.2301

3.178

1.02

Yes

TaU-box 168/169

Tandem

3.5713

3.441

1.038

Yes

TaU-box 168/170

Tandem

4.6876

4.598

1.019

Yes

TaU-box 169/170

Segment

3.1908

3.1286

1.019

Yes

TaU-box 197/198

Segment

3.1082

2.7676

1.121

Yes

ZmU-box 18/19

Tandem

2.06

1.89

1.08

Yes

ZmU-box 43/44

Segment

1.98

1.75

1.13

Yes

  1. Ka/Ks < 1 means negative selection, Ka/Ks = 1 means neutral selection, and Ka/Ks > 1 means positive selection