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Table 7 Number of conserved sites, variable sites, and frequency of each nucleotide

From: In silico analysis of promoter region and regulatory elements of glucan endo-1,3-beta-glucosidase encoding genes in Solanum tuberosum: cultivar DM 1-3 516 R44

Gene

bp

Conserved site

Variable site

T

C

A

G

ID102588651 Solanum tuberosum

1645

410 (24.9%)

1235 (75%)

34.7

17.8

29

18.3

ID102594958 Solanum tuberosum

2928

415 (14.1%)

1230 (42%)

33.7

17.4

30

18.7

ID102601393 Solanum tuberosum

1969

461 (23.4%)

1184 (60%)

34.5

20.1

29.7

15.5

ID102595473 Solanum tuberosum

1587

418 (26.3%)

1169 (73%)

34.4

15.8

32.7

17

ID102593331 Solanum tuberosum

3721

447 (12%)

1198 (32.1%)

36

16.6

30.7

16.5

ID102578898 Solanum tuberosum

4566

481 (10.5%)

1164 (25.4%)

35.7

17.7

27.8

18.6

ID102583593 Solanum tuberosum

1378

369 (26.7%)

1009 (73.2%)

29.3

26.6

25.1

18.8

ID102605560 Solanum tuberosum

1545

438 (28.3%)

1107 (71.6%)

32.1

17.8

30.2

19.7

ID102601178 Solanum tuberosum

5812

441 (7.5%)

1204 (20.7%)

36.7

16.8

26.9

19.4

ID102587248 Solanum tuberosum

1740

388 (22.2%)

1257 (72.2%)

31.6

20

26.8

21.4

ID102604922 Solanum tuberosum

5363

432 (8%)

1213 (22.6%)

37

17.5

25.8

19.5

ID102605428 Solanum tuberosum

1360

374 (27.5%)

986 (72.5%)

29.2

20.6

31.1

18.8

ID102596927 Solanum tuberosum

2460

444 (18%)

1201 (48.8%)

32.6

18.1

31.6

17.6

ID102595860 Solanum tuberosum

2570

421 (16.3%)

1224 (47.6%)

33.8

16.7

30.9

18.4

ID102583800 Solanum tuberosum

1920

446 (23.2%)

1199 (62.4%)

31.9

22.5

25.2

20.2

ID102581946 Solanum tuberosum

3960

434 (10.9%)

1211 (30.5%)

34.2

18.6

27.8

19.2

ID102578810 Solanum tuberosum

2778

440 (15.8%)

1205 (43.3%)

35.4

19.3

25.8

19.4

ID102595638 Solanum tuberosum

3982

431 (10.8%)

1214 (30.4%)

38.8

16.8

27.8

16.3

ID102589208 Solanum tuberosum

1608

464 (28.8%)

1144 (71.1%)

34.5

16.7

32.7

15.9

ID107823411 Nicotiana tabacum

2207

456 (20.6%)

1189 (53.8%)

33.6

18.5

29.7

18

ID107825406 Nicotiana tabacum

1967

465 (23.6%)

1180 (59.9%)

34.1

18

29.8

17.9

ID107789548 Nicotiana tabacum

1814

435 (23.9%)

1210 (66.7%)

35

17.9

30.3

16.7

ID107763655 Nicotiana tabacum

2012

410 (20.3%)

1235 (61.3%)

34.2

18.2

31.2

16.2

ID107801151 Nicotiana tabacum

2189

461 (21%)

1184 (54%)

34

18.5

29.5

17.8

ID107777766 Nicotiana tabacum

2034

445 (21.8%)

1200 (58.9%)

34.1

17.7

31.9

16.1

ID107814850 Nicotiana tabacum

1809

466 (25.7%)

1179 (65.1%)

29.1

19.5

30.4

20.7

ID107763289 Nicotiana tabacum

1671

437 (26.1%)

1208 (72.2%)

34.3

18.6

30.5

16.4

ID107784423 Nicotiana tabacum

1630

432 (26.5%)

1198 (73.4%)

34.4

19.1

28.2

18.2

ID107820469 Nicotiana tabacum

1311

342 (26%)

969 (73.9%)

37.2

15

29.9

17.8

ID107803828 Nicotiana tabacum

2607

411 (15.7%)

1234 (47.3%)

33.1

19.6

27.7

19.4

ID107824944 Nicotiana tabacum

1305

332 (25.4%)

973 (74.5%)

28.4

24.5

26.2

20.7

ID543987 Solanum lycopersicum

2025

453 (22.3%)

1192 (58.8%)

34.5

16.7

31

17.6

ID543986 Solanum lycopersicum

1717

479 (27.8%)

1166 (67.9%)

34.6

16.5

33.1

15.6

ID101245933 Solanum lycopersicum

3858

452 (11.7%)

1193 (30.9%)

37.5

16.5

30.5

15.2

ID824893 Arabidopsis thaliana

1571

423 (26.9%)

1148 (73%)

27.6

20.9

29.4

22

ID834215 Arabidopsis thaliana

2506

423 (16.8%)

1222 (48.7%)

30.4

24.8

24.7

19.9

ID824891 Arabidopsis thaliana

1503

430 (28.6%)

1073 (71.3%)

28

22.5

28.1

21.2

ID832156 Arabidopsis thaliana

1140

272 (23.8%)

868 (76.1%)

26.8

24.2

28

20.7

ID824894 Arabidopsis thaliana

1953

459 (23.5%)

1186 (60.7%)

31.6

18.5

32.4

17.3

ID832155 Arabidopsis thaliana

1602

409 (25.5%)

1193 (74.4%)

28.3

22.6

28.9

20