Skip to main content

Table 4 List of matches to the query motif from the database JASPAR2018_CORE_vertebrates_non redundant and Uniprobe mouse

From: In silico analysis of promoter region and regulatory elements of glucan endo-1,3-beta-glucosidase encoding genes in Solanum tuberosum: cultivar DM 1-3 516 R44

S no

Match name

Data base

E-value

Over lap

Offset

Orientation

Function

1

(MA0016.1(usp)

JASPAR2018_CORE_vetebrates_non redundant

1.91e−01

10

0

Normal

Receptor for ecdysone. May be an important modulator of insect metamorphosis. Plays an important part in embryonic and post-embryonic development

2

MA0359.1(RAP1)

JASPAR2018_CORE_vetebrates_non redundant

7.76e−01

10

−2

Reverse complement

Rap1 is predominantly involved in cell adhesion and cell junction formation.

3

MA0159,1(RARA:: RXRA)

JASPAR2018_CORE_vetebrates_non redundant

1.25e+00

17

−1

Normal

Receptor for retinoic acid. Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes.

4

MA1149.1 (RARA :: RXRG)

JASPAR2018_CORE_vetebrates_non redundant

2.24e+00

18

0

Normal

Receptor for retinoic acid. Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes

5

MA0258.2 (ESR2)

JASPAR2018_CORE_vetebrates_non redundant

3.76e+00

15

−1

Reverse complement

Its molecular function is transcription, transcription regulation

6

UP00070_2(Gcm1_secondary)

Uniprobe mouse

6.48e+00

17

0

Normal

The transcription factor glial cells missing 1 (Gcm1) plays a pivotal role in labyrinth development

7

MA0450.1(hkb)

JASPAR2018_CORE_vetebrates_non redundant

9.09e+00

9

−11

Normal

As a repressor, hkb assures that the formation of mesoderm (by ventral invagination of the presumptive mesoderm) does not spread to the two poles of the egg.

8

MA0801.1 (MGA)

JASPAR2018_CORE_vetebrates_non redundant

9.30e+00

8

−12

Normal

Functions as a dual-specificity transcription factor, regulating the expression of both MAX-network and T-box family target genes. Functions as a repressor or an activator.