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Table 3 Levels of effective alleles, Shannon’s information index, unbiased expected heterozygosity value, No. of private alleles, and No. of LComm alleles ingenerated by SSR, LTR-IRAP, and LTR-REMAP assays for 20 citrus genotypes

From: Patterns of genetic structure and evidence of Egyptian Citrus rootstock based on informative SSR, LTR-IRAP and LTR-REMAP molecular markers

Marker system

Group

N

Na/b

%P

Na

SE

Ne

SE

I

SE

uHe

SE

N. private alleles

N. LComm alleles (≤ 50%)

SSR

Kumquat

1

41

70.83%

1.71

0.09

1.71

0.09

0.49

0.07

0.71

0.09

0.208

0.292

Acids

6

75

95.83%

3.13

0.26

2.27

0.17

0.87

0.08

0.54

0.04

0.667

0.542

Grapefruits and pummelos

4

58

79.17%

2.42

0.22

1.93

0.18

0.64

0.09

0.43

0.06

0.208

0.333

Mandarins

3

54

91.67%

2.25

0.16

1.88

0.15

0.64

0.07

0.49

0.05

0.167

0.250

Oranges

6

64

95.83%

2.67

0.17

2.21

0.13

0.82

0.06

0.56

0.03

0.083

0.333

LTR-IRAP

Kumquat

1

61

0.00%

0.40

0.04

1.00

0.00

0.00

0.00

0.00

0.00

10

8

Acids

6

104

60.53%

1.29

0.07

1.31

0.03

0.29

0.02

0.21

0.02

19

21

Grapefruits and pummelos

4

67

22.37%

0.66

0.07

1.16

0.03

0.13

0.02

0.10

0.02

5

8

Mandarins

3

84

36.18%

0.91

0.07

1.23

0.03

0.20

0.02

0.16

0.02

6

15

Oranges

6

89

45.39%

1.04

0.08

1.30

0.03

0.25

0.02

0.18

0.02

5

12

LTR-REMAP

Kumquat

1

100

0.00%

0.33

0.03

1.00

0.00

0.00

0.00

0.00

0.00

15

24

Acids

6

182

57.00%

1.18

0.06

1.27

0.02

0.27

0.01

0.19

0.01

24

40

Grapefruits and pummelos

4

152

29.67%

0.80

0.05

1.20

0.02

0.17

0.02

0.13

0.01

15

25

Mandarins

3

129

25.67%

0.69

0.05

1.17

0.02

0.15

0.01

0.12

0.01

10

14

Oranges

6

197

59.00%

1.25

0.05

1.32

0.02

0.29

0.02

0.21

0.01

15

51

  1. N No. of species per group, Na/b No. of alleles or bands, %P percentage of polymorphic loci, Na No. of different alleles, Ne No. of effective alleles, I Shannon’s Information Index