Table 2 List of SSR, LTR-IRAP, and LTR-REMAP primers sequence and its optimum annealing temperature
A: SSR | |||
Primer name | Forward | Reverse | TM |
 SA1 | TGTATCCCTGCCGTTTCTTC | GAAACTTCCCACTTCGCTCA | 57 |
 SA2 | ACTTGGGGCTTTCTCACGTT | TTTGCCAGATATTGCTGCTG | 57 |
 SA3 | TCTCCGAACTCTCGCACTAAA | GGGGGATGTTGGAGATTTTT | 58 |
 SA4 | CAGTCGATTGTTTGCTGTGG | TTCGGAAATTTTTCTGTGGA | 57 |
 SA5 | CCACCACTCAATTTTGCTGA | GCATTCACACGATCCACATC | 55 |
 SA6 | TCTCCGAACTCTCGCACTAAA | GGGGGATGTTGGAGATTTTT | 58 |
 SA7 | GAGAGAGGTGGCAATTGAGC | TTGCCTCACAACAAACAAAGA | 59 |
 SA8 | TCACAAATTTATGCCTTGCG | TCGATAGTGCACCACGACAT | 53 |
 SA9 | TCGAGAAAATTAAGTCTTTTCTTCC | ATTCTTCGGTTCTTGGGCTT | 55 |
 SA10 | CCCAGGTTAGCAACTTCGTT | CAAAGTCAATTGGAATCTCCTTG | 57 |
 SA11 | AGCCTTGGCTGAGCTGTAAA | GGGTGCCATTTAAAAACCCT | 57 |
 SA12 | CCGCCAGATTTTTCATTTTC | GAATCCGCCACCAATTTAAC | 53 |
 SA13 | AAGAGCACTTGCCGAGGATA | GAATCCCATTTGATCCGAGA | 57 |
 SA14 | CCAAGTTTTGCTTCCCTTGA | AGCTCTGGTGGATTTCCTGA | 55 |
 SA15 | TCGAAGAGAGGGAGGAGTCA | AGAACCACCCCCTTCTTTGT | 59 |
 SA16 | CGGATGGAAGAAAACCTGAA | AGTCGAATTACGGGTTGCAG | 55 |
 SA17 | GCAGCCCTCAACATGATACA | GCCGTCAACTTTCTTGCTTC | 57 |
 SA18 | TCTCCTCTCCTCTTGTTCTTCTTC | TTGATGGTCTTGGAAGGGTC | 60 |
 SA19 | CGCTGAGAACTGAGAAGGAAA | TGCAATTCGATGTTGTTCTTG | 58 |
 SA20 | AGTCTCTGGCCTTGCAGGTA | GGATCAATGTCCCCAATCAC | 59 |
 SA21 | ATGGCTGCTCTCAAATGCTT | CTTTTCCTAAACCAGCTGCC | 55 |
 SA22 | AGGATGCCATGTTGGTTCTC | CCATTGCTAGAAACTCCCCA | 57 |
 SA23 | GTGCAGCGCAACAACATAAC | GGCCAATAGCTTCCATTCAA | 57 |
 SA24 | GTCCGTTCTCCTCGCTCTTC | TGTAGGTAGGCAACGGAAGG | 61 |
 SA25 | CGCATACATCATCATCGTCA | GCCTGGATACGTGAACCACT | 55 |
 SA26 | TGTATCCCTGCCGTTTCTTC | GAAACTTCCCACTTCGCTCA | 57 |
B: LTR-IRAP | |||
Primer name | Forward | Reverse | TM |
 LTR 1 | TGCCACGATCAGCAAGAATCA | TCTCTTGACAATTCACGTGGCT | 57 |
 LTR 2 | AGTAACTGTAAGCTGACGTGGCT | GGTGTTGTAGAATCTTCCAGACT | 53 |
 LTR 3 | CCGTTTTGCCGTCTGATCTCT | AATCCACCTCCTCGTGGGAT | 58 |
 LTR 4 | TGTGGTGCAGTGAACCATTCA | TCGGCTGGAAACCCGAGCTTGC | 59 |
 LTR 5 | GCTCTCTGGCTGTTATCGGTT | AGGTTGGCCGAACCACGTAA | 54 |
 LTR 6 | TGCGAATCCACATGGTGATCACA | GGATCGTGATCTAGGAGCCTA | 56 |
 LTR 7 | TCGTCAATCCGCATGGCTTCCA | GACGTAGGCTAAAAGCCGAACCA | 57 |
 LTR 8 | GATACCAGGCTCTTACGGGACAC | CAACCGGCGTGCTCTGACTTGT | 53 |
 LTR 9 | GACTTCGCCCAAACTTTGTGA | GTAGGCGGGGATTGCCGAACCA | 55 |
 LTR 10 | TCGCCGTTGTTCGTTGAGTGTCT | CGAACCACGTAAAAATCCGCGTG | 56 |
 LTR 11 | CAGCAACTGCACTGTTCCAGA | TCACTGTGGAGACGATCTTGA | 55 |
 LTR 12 | TGCGAATCCACATGGTGATCACA | TAGGAGCCTAAATCACTTCA | 53 |
 LTR 13 | CTCCTAATGGTTCCTAATACCAGACAA | ACCTCTCGAATTGTAGGTCAGG | 56 |
 LTR 14 | GCAAACCAAGATTGGTGAGGGCA | GCAACCCGTTTTCGTCCAGA | 57 |
C: LTR-REMAP | |||
Primer name | Primer combination | ||
 SA1-REMAP | F 1 REMAP/R AM-SSR10 | ||
 SA2-REMAP | F 2 REMAP/R AM-SSR12 | ||
 SA3-REMAP | F 3 REMAP/R AM-SSR17 | ||
 SA4-REMAP | F 4 REMAP/R AM-SSR25 | ||
 SA5-REMAP | F 5 REMAP/R AM-SSR22 | ||
 SA6-REMAP | F 6 REMAP/R AM-SSR24 | ||
 SA7-REMAP | F 7 REMAP/R AM-SSR23 | ||
 SA8-REMAP | F 8 REMAP/R AM-SSR2 | ||
 SA9-REMAP | F 9 REMAP/R AM-SSR11 | ||
 SA10-REMAP | F 10 REMAP/R AM-SSR14 | ||
 SA11-REMAP | F 1 REMAP/R AM-SSR6 | ||
 SA12-REMAP | F 2 REMAP/R AM-SSR9 | ||
 SA13-REMAP | F 3 REMAP/R AM-SSR11 | ||
 SA14-REMAP | F 4 REMAP/R AM-SSR8 | ||
 SA15-REMAP | F 5 REMAP/R AM-SSR6 | ||
 SA16-REMAP | F 10 REMAP/R AM-SSR12 | ||
 SA17-REMAP | F 11 REMAP/R AM-SSR5 | ||
 SA18-REMAP | F 12 REMAP/R AM-SSR12 | ||
 SA19-REMAP | F 13 REMAP/R AM-SSR16 | ||
 SA20-REMAP | F 14 REMAP/R AM-SSR14 | ||