Table 3 Predicted consensus secondary structure content and predicted disulfide patterns of M4 metalloproteases
From: In silico characterization and structural modeling of bacterial metalloprotease of family M4
S.N. | Bacteria name | UniProtKB | Alpha helix | Extended strand | Beta turn | Random coil | Disulfide bridges prediction |
|---|---|---|---|---|---|---|---|
1 | Aeromonas hydrophila | I2A620 | 28.98 | 23.39 | 7.12 | 40.51 | 214–550, 240–452, 481–561 |
2 | Bacillus thermoproteolyticus | P00800 | 35.58 | 20.99 | 4.74 | 38.69 | None |
3 | B. stearothermophilus | P43133 | 32.67 | 20.33 | 5.26 | 41.74 | None |
4 | B. subtilis subsp. Amylosacchariticus | P68735 | 27.64 | 20.54 | 6.14 | 45.68 | None |
5 | B. subtilis | P68736 | 27.64 | 20.54 | 6.14 | 45.68 | None |
6 | B. cereus | P05806 | 30.92 | 20.32 | 4.95 | 43.82 | None |
7 | B. brevis | P43263 | 33.02 | 20.87 | 5.69 | 40.42 | None |
8 | B. polymyxa | P29148 | 30.68 | 20.68 | 4.58 | 44.07 | None |
9 | B. caldolyticus | Q59193 | 32.6 | 20.51 | 4.76 | 42.12 | None |
10 | B. megaterium | P0CH29 | 31.14 | 19.75 | 5.16 | 43.95 | None |
11 | B. amyloliquefaciens | P06832 | 32.44 | 19 | 4.8 | 43.76 | None |
12 | B. acidocaldarius | Q43880 | 31.14 | 21.25 | 5.13 | 42.49 | None |
13 | Bacillus sp. (strain EA1) | Q59223 | 32.42 | 22.53 | 5.13 | 39.93 | None |
14 | Clostridium putrefaciens | A0A381J9B8 | 33.45 | 19.89 | 5.79 | 40.87 | None |
15 | Enterococcus faecalis | Q833V7 | 30.39 | 23.53 | 5.88 | 40.2 | None |
16 | Erwinia_carotovora | Q99132 | 44.09 | 12.97 | 6.05 | 36.89 | None |
17 | Legionella longbeachae | P55110 | 35.92 | 18.53 | 7.37 | 38.19 | 243–270, 349–498 |
18 | Legionella pneumophila | P21347 | 32.04 | 19.15 | 7.55 | 41.25 | None |
19 | Listeria monocytogenes | P23224 | 30.39 | 21.96 | 5.1 | 42.55 | None |
20 | Pseudomonas aeruginosa | P14756 | 37.15 | 18.67 | 7.83 | 36.35 | 227–255, 467–494 |
21 | Renibacterium salmoninarum | P55111 | 35.58 | 15.33 | 6.75 | 42.34 | 258–336, 519–535 |
22 | Staphylococcus aureus | P81177 | 31.43 | 20.43 | 5.3 | 42.83 | None |
23 | Staphylococcus epidermidis | P0C0Q3 | 33.73 | 20.71 | 4.93 | 40.63 | None |
24 | Streptomyces lividans TK24 | D6EEH2 | 27.24 | 21.57 | 5.48 | 45.7 | 336–438, 338–481 |
25 | Serratia marcescens | Q06517 | 37.78 | 12.22 | 5.68 | 44.32 | 139–295 |
26 | Vibrio proteolyticus | Q00971 | 30.21 | 22.66 | 6.73 | 40.39 | 231–570, 257–581, 473–502 |
27 | Vibrio anguillarum | P43147 | 30.61 | 21.93 | 5.73 | 41.73 | 260–572, 476–583 |
28 | Vibrio aestuarianus | A8JNY9 | 29.3 | 22.59 | 7.53 | 40.59 | 234–260, 476–572, 505–583 |
29 | Vibrio vulnificus | O06694 | 30.03 | 21.45 | 6.27 | 42.24 | 231–257, 473–502, 569–580 |
30 | Vibrio cholerae O1 | P24153 | 28.74 | 23.97 | 7.06 | 40.23 | 231–473, 257–581 |
31 | Vibrio splendidus | Q76LC2 | 30.81 | 23.06 | 5.6 | 40.53 | 230–568, 256–579 |