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Table 5 Degenerate primer evaluation for secondary structure

From: In silico design and validation of a highly degenerate primer pair: a systematic approach

Primers

Predicted secondary structure

Tm (°C)

∆G kcal/mol

catAf

catAr

Internal or 5'end dimer

36.8

−15.0

  1. Tm Melting temperature, ∆G Change in free energy