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Table 10 In silico PCR analysis of primer pair catAf/catAr with targeted sequences

From: In silico design and validation of a highly degenerate primer pair: a systematic approach

Bacterial strains

Accession numbers

Product size

Product length

Primer dimer Tm (°C)

Burkholderia multivorans ATCC BAA-247

NZ_CP009831.1

365

287-651

24.0

Bordetella holmesii ATCC 51541

NZ_CP007494.1

374

308-681

24.0

Rhodococcus pyridinivorans SB3094

NC_023150.1

371

305-675

24.0

Rhodococcus rhodochrous NCTC10210

NZ_LT906450.1

371

305-675

24.0

Burkholderia cepacia ATCC 25416 strain UCB 717

NZ_CP012982.1

365

287-651

24.0

Burkholderia vietnamiensis LMG 10929

NZ_CP009630.1

365

385-749

24.0

Pseudomonas proteolytica LMG 22710

NZ_FNTR01000004.1

365

308-672

24.0

Pseudomonas fluorescens NCTC10038

NZ_LS483372.1

365

308-672

24.0

Sinorhizobium fredii CCBAU 25509

NZ_CP029451.1

374

308-681

24.0

Pseudomonas veronii strain R02

NZ_CP018420.1

365

308-672

24.0

Klebsiella grimontii SS141

NZ_CP044527.1

365

308-672

24.0

Pseudomonas marginalis ICMP 3553 scaffold44

NZ_LKEG01000057.1

365

379-743

24.0

Pseudomonas plecoglossicida XSDHY-P

NZ_CP031146.1

365

308-672

24.0