In silico modelling and characterization of eight blast resistance proteins in resistant and susceptible rice cultivars

Chandrakanth, R.; Sunil, L.; Sadashivaiah, L.; Devaki, N. S.

doi:10.1186/s43141-020-00076-0

Journal of Genetic Engineering and Biotechnology

Table 4 Homology modeling of eight resistance proteins

From: In silico modelling and characterization of eight blast resistance proteins in resistant and susceptible rice cultivars

Protein	Swiss Model				I-TASSER				PHYRE2
	PDB ID	Identity	Query	RMSD	PDB ID	Identity	Query	RMSD	PDB ID	Identity	Query
		(%)	Coverage			(%)	Coverage			(%)	Coverage
RP1	4kxf.1.A	16.67	0.47	3.20 Å	3sfzA	0.11	0.84	2.76	c2a5yB	14.00	48.00
	4kxf.2.A	16.67	0.47	3.20 Å	1z6tB	0.13	0.50	2.63	c1vt4K	18.00	60.00
	4kxf.3.A	16.67	0.47	3.20 Å	3izaA	0.05	0.61	6.50	c1vt4J	18.00	60.00
	4kxf.4.A	16.67	0.47	3.20 Å	1vt4l	0.07	0.62	7.30	c3iz8E	18.00	60.00
RP2	4mn8.1.A	17.73	0.45	3.06 Å	3javA	0.09	0.97	1.70	c2a5yB	14.00	36.00
	4mn8.1.A	17.76	0.45	3.06 Å	5hb4B	0.04	0.47	9.25	clvt4P	14.00	44.00
	3jbl.1.A	15.66	0.42	4.50 Å	3opbA	0.04	0.37	6.85	clvt4L	14.00	44.00
	5gr8.1.A	16.64	0.42	2.59 Å	5fymA	0.03	0.44	9.68	clvt4K	14.00	44.00
RP3	4m9y.1.B	17.08	0.28	4.20 Å	6b5bA	0.11	0.78	2.43	c2a5yB	17.00	30.00
	2a5y.1.C	17.08	0.28	2.60 Å	4kxfK	0.08	0.45	5.21	c3iz8A	19.00	41.00
	2a5y.1.B	17.08	0.28	2.60 Å	1vt4l	0.04	0.49	8.96	c3iz8E	19.00	41.00
	3lqr.1.B	17.08	0.28	3.90 Å	3izaA	0.05	0.45	8.38	clvt4M	19.00	41.00
RP4	5gs0.1.A	16.06	0.26	3.28 Å	1z6tB	0.15	0.52	1.20	c2a5yB	15.00	42.00
	3ulv.1.A	16.33	0.26	3.52 Å	3sfzA	0.09	0.43	1.91	c1vt4N	15.00	51.00
	1ziw.1.A	16.14	0.26	2.10 Å	3vkgA	0.05	0.56	9.47	c3iz8F	15.00	51.00
	4lsa.1.A	17.82	0.27	3.30 Å	4ai6A	0.03	0.50	9.02	c3iz8A	15.00	51.00
RP5	4kxf.1.A	12.84	0.46	3.20 Å	6b5bA	0.08	0.86	2.01	c2a5yB	11.00	34.00
	4kxf.2.A	12.84	0.46	3.20 Å	4kxfK	0.06	0.51	5.38	c3iz8F	15.00	34.00
	4kxf.3.A	12.84	0.46	3.20 Å	1vt4l	0.04	0.55	8.42	c3iz8G	15.00	34.00
	4kxf.4.A	12.84	0.46	3.20 Å	3izaA	0.05	0.50	8.19	c3iz8A	15.00	34.00
RP6	3jbl.1.A	15.47	0.64	4.50 Å	6b5bA	0.12	0.86	2.06	c2a5yB	15.00	44.00
	5gs0.1.A	14.81	0.45	3.28 Å	4kxfK	0.08	0.55	4.93	c3iz8D	19.00	43.00
	4mn8.1.A	18.00	0.44	3.06 Å	1vt4l	0.07	0.59	8.34	c1vt4P	19.00	43.00
	4z0c.1.A	18.85	0.44	2.30 Å	5x6oC	0.04	0.58	8.30	c3iz8C	19.00	43.00
RP7	3jbl.1.A	14.33	0.65	4.50 Å	6b5bA	0.12	0.85	2.27	c2a5yB	15.00	44.00
	5ixo.1.A	16.89	0.42	1.74 Å	4kxfK	0.08	0.55	5.36	c3iz8G	17.00	43.00
	4lsx.1.A	17.54	0.43	3.30 Å	1vt4l	0.07	0.58	8.26	c3iz8F	17.00	43.00
	4lsa.1.A	17.54	0.43	2.50 Å	5x6oC	0.04	0.59	8.40	c1vt4O	17.00	43.00
RP8	3jbl.1.A	15.02	0.67	4.50 Å	4kxfK	0.13	0.82	2.47	c2a5yB	15.00	50.00
	4m9y.1.B	16.38	0.45	4.20 Å	6b5bA	0.05	0.62	5.46	c3iz8B	17.00	49.00
	2a5Y.1.C	16.38	0.45	2.60 Å	5irlA	0.08	0.58	5.85	c1vt4L	17.00	49.00
	2a5Y.1.B	16.38	0.45	2.60 Å	5h64A	0.05	0.67	8.46	3iz8F	17.00	49.00

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