TY - JOUR AU - Dean, R. A. AU - Talbot, N. J. AU - Ebbole, D. J. PY - 2005 DA - 2005// TI - The genome sequence of the rice blast fungus Magnaporthe grisea JO - Nature VL - 434 UR - https://doi.org/10.1038/nature03449 DO - 10.1038/nature03449 ID - Dean2005 ER - TY - JOUR AU - Sharma, K. AU - Antunes, I. L. AU - Rajulapati, V. AU - Goyal, A. PY - 2018 DA - 2018// TI - Low-resolution SAXS and comparative modelling based structure analysis of endo-β-1, 4-xylanase a family 10 glycoside hydrolase from Pseudopedobacter saltans comb. nov JO - Int J Biol Macromol VL - 112 UR - https://doi.org/10.1016/j.ijbiomac.2018.02.037 DO - 10.1016/j.ijbiomac.2018.02.037 ID - Sharma2018 ER - TY - STD TI - Liu J, Wang X Mitchell T et al. (2010) Recent progress and understanding of the molecular mechanisms of the rice - Magnaporthe oryzae interaction 11:419–427. https://doi.org/10.1111/J.1364-3703.2009.00607.X ID - ref3 ER - TY - JOUR AU - Gururani, M. A. AU - Venkatesh, J. AU - Upadhyaya, C. P. PY - 2012 DA - 2012// TI - Plant disease resistance genes: current status and future directions JO - Physiol Mol Plant Pathol VL - 78 UR - https://doi.org/10.1016/j.pmpp.2012.01.002 DO - 10.1016/j.pmpp.2012.01.002 ID - Gururani2012 ER - TY - JOUR AU - DeYoung, B. J. AU - Innes, R. W. PY - 2006 DA - 2006// TI - Plant NBS-LRR proteins in pathogen sensing and host defence JO - Nat Immunol VL - 7 UR - https://doi.org/10.1038/ni1410 DO - 10.1038/ni1410 ID - DeYoung2006 ER - TY - JOUR AU - Li, W. AU - Chern, M. AU - Yin, J. PY - 2019 DA - 2019// TI - Recent advances in broad-spectrum resistance to the rice blast disease JO - Curr Opin Plant Biol VL - 50 UR - https://doi.org/10.1016/j.pbi.2019.03.015 DO - 10.1016/j.pbi.2019.03.015 ID - Li2019 ER - TY - JOUR AU - Zhao, H. AU - Wang, X. AU - Jia, Y. PY - 2018 DA - 2018// TI - The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance JO - Nat Commun VL - 9 UR - https://doi.org/10.1038/s41467-018-04369-4 DO - 10.1038/s41467-018-04369-4 ID - Zhao2018 ER - TY - JOUR AU - Devanna, N. B. AU - Vijayan, J. AU - Sharma, T. R. PY - 2014 DA - 2014// TI - The blast resistance gene Pi54 of cloned from Oryza officinalis interacts with Avr-Pi54 through its novel non-LRR domains JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0104840 DO - 10.1371/journal.pone.0104840 ID - Devanna2014 ER - TY - JOUR AU - McHale, L. AU - Tan, X. AU - Koehl, P. AU - Michelmore, R. W. PY - 2006 DA - 2006// TI - Plant NBS-LRR proteins: adaptable guards JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-4-212 DO - 10.1186/gb-2006-7-4-212 ID - McHale2006 ER - TY - JOUR AU - Doerks, T. AU - Mering, C. AU - Bork, P. PY - 2004 DA - 2004// TI - Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh973 DO - 10.1093/nar/gkh973 ID - Doerks2004 ER - TY - JOUR AU - Margelevičius, M. AU - Venclovas, Č. PY - 2005 DA - 2005// TI - PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-185 DO - 10.1186/1471-2105-6-185 ID - Margelevičius2005 ER - TY - JOUR AU - Schwede, T. AU - Kopp, J. AU - Guex, N. AU - Peitsch, M. C. PY - 2003 DA - 2003// TI - SWISS-MODEL: an automated protein homology-modelling server JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg520 DO - 10.1093/nar/gkg520 ID - Schwede2003 ER - TY - JOUR AU - Sali, A. AU - Blundell, T. L. PY - 1993 DA - 1993// TI - Comparative protein modelling by satisfaction of spatial restraints JO - J Mol Biol VL - 234 UR - https://doi.org/10.1006/jmbi.1993.1626 DO - 10.1006/jmbi.1993.1626 ID - Sali1993 ER - TY - JOUR AU - Pettersen, E. F. AU - Goddard, T. D. AU - Huang, C. C. AU - Couch, G. S. AU - Greenblatt, D. M. AU - Meng, E. C. AU - Ferrin, T. E. PY - 2004 DA - 2004// TI - UCSF chimera - a visualization system for exploratory research and analysis JO - J Comput Chem VL - 25 UR - https://doi.org/10.1002/jcc.20084 DO - 10.1002/jcc.20084 ID - Pettersen2004 ER - TY - JOUR AU - Adebali, O. AU - Ortega, D. R. AU - Zhulin, I. B. PY - 2014 DA - 2014// TI - CDvist: a web server for identification and visualization of conserved domains in protein sequences JO - Bioinformatics VL - 31 UR - https://doi.org/10.1093/bioinformatics/btu836 DO - 10.1093/bioinformatics/btu836 ID - Adebali2014 ER - TY - JOUR AU - Finn, R. D. AU - Attwood, T. K. AU - Babbitt, P. C. PY - 2016 DA - 2016// TI - InterPro in 2017—beyond protein family and domain annotations JO - Nucleic Acids Res VL - 45 UR - https://doi.org/10.1093/nar/gkw1107 DO - 10.1093/nar/gkw1107 ID - Finn2016 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Källberg, M. AU - Wang, H. AU - Wang, S. PY - 2012 DA - 2012// TI - Template-based protein structure modelling using the RaptorX web server JO - Nat Protoc VL - 7 UR - https://doi.org/10.1038/nprot.2012.085 DO - 10.1038/nprot.2012.085 ID - Källberg2012 ER - TY - JOUR AU - Laskowski, R. A. AU - Watson, J. D. AU - Thornton, J. M. PY - 2005 DA - 2005// TI - ProFunc: a server for predicting protein function from 3D structure JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki414 DO - 10.1093/nar/gki414 ID - Laskowski2005 ER - TY - STD TI - Mondal D, Ghosh A, Roy D, Kumar A, Shamurailatpam D, Bera S, et al (2017) Yield loss assessment of rice (Oryza sativa L.) due to different biotic stresses under system of rice intensification (SRI). ID - ref20 ER - TY - JOUR AU - Maiti, R. AU - Domselaar, G. H. AU - Zhang, H. AU - Wishart, D. S. PY - 2004 DA - 2004// TI - SuperPose: a simple server for sophisticated structural superposition JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh477 DO - 10.1093/nar/gkh477 ID - Maiti2004 ER - TY - JOUR AU - Ikai, A. PY - 1980 DA - 1980// TI - Thermostability and aliphatic index of globular proteins JO - J Biochem VL - 88 ID - Ikai1980 ER - TY - JOUR AU - Kanazin, V. AU - Marek, L. F. AU - Shoemaker, R. C. PY - 1996 DA - 1996// TI - Resistance gene analogues are conserved and clustered in soybean JO - Proc Natl Acad Sci VL - 93 UR - https://doi.org/10.1073/pnas.93.21.11746 DO - 10.1073/pnas.93.21.11746 ID - Kanazin1996 ER - TY - JOUR AU - Dangl, J. L. AU - Jones, J. D. G. PY - 2001 DA - 2001// TI - Plant pathogens and integrated defence responses to infection JO - Nature VL - 411 UR - https://doi.org/10.1038/35081161 DO - 10.1038/35081161 ID - Dangl2001 ER - TY - JOUR AU - Sharma, T. R. AU - Rai, A. K. AU - Gupta, S. K. PY - 2012 DA - 2012// TI - Rice blast management through host-plant resistance: retrospect and prospects JO - Agric Res VL - 1 UR - https://doi.org/10.1007/s40003-011-0003-5 DO - 10.1007/s40003-011-0003-5 ID - Sharma2012 ER - TY - BOOK AU - Brindha, S. AU - Sailo, S. AU - Chhakchhuak, L. AU - Kalita, P. AU - Gurusubramanian, G. AU - Kumar, J. N. S. PY - 2011 DA - 2011// TI - Protein 3D structure determination using homology modelling and structure analysis PB - Colloquium www science vision in. Citeseer CY - In ID - Brindha2011 ER - TY - JOUR AU - Zhang, Y. PY - 2008 DA - 2008// TI - Progress and challenges in protein structure prediction JO - Curr Opin Struct Biol VL - 18 UR - https://doi.org/10.1016/j.sbi.2008.02.004 DO - 10.1016/j.sbi.2008.02.004 ID - Zhang2008 ER - TY - JOUR AU - Wang, C. AU - Yang, Y. AU - Yuan, X. PY - 2014 DA - 2014// TI - Genome-wide association study of blast resistance in indica rice JO - BMC Plant Biol VL - 14 UR - https://doi.org/10.1186/1471-2229-14-3 DO - 10.1186/1471-2229-14-3 ID - Wang2014 ER - TY - JOUR AU - Bagnaresi, P. AU - Biselli, C. AU - Orrù, L. PY - 2012 DA - 2012// TI - Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0051609 DO - 10.1371/journal.pone.0051609 ID - Bagnaresi2012 ER - TY - JOUR AU - Mahesh, H. B. AU - Shirke, M. D. AU - Singh, S. PY - 2016 DA - 2016// TI - Indica rice genome assembly, annotation and mining of blast disease resistance genes JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2523-7 DO - 10.1186/s12864-016-2523-7 ID - Mahesh2016 ER - TY - JOUR AU - Matić, S. AU - Bagnaresi, P. AU - Biselli, C. PY - 2016 DA - 2016// TI - Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seed-borne pathogen Fusarium fujikuroi JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2925-6 DO - 10.1186/s12864-016-2925-6 ID - Matić2016 ER - TY - JOUR AU - Chen, J. -. Y. AU - Huang, J. -. Q. AU - Li, N. -. Y. PY - 2015 DA - 2015// TI - Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt JO - BMC Plant Biol VL - 15 UR - https://doi.org/10.1186/s12870-015-0508-3 DO - 10.1186/s12870-015-0508-3 ID - Chen2015 ER - TY - STD TI - Zhao M, Ji H-M, Gao Y, et al (2017) Comparative transcriptome profiling conferring of resistance to Fusarium oxysporum Infection between resistant and susceptible tomato. bioRxiv 116988. ID - ref33 ER - TY - STD TI - Tan S, Wu S (2012) Genome-wide analysis of nucleotide-binding site disease resistance genes in Brachypodium distachyon. Comp Funct Genomics ID - ref34 ER - TY - JOUR AU - Martin, G. B. AU - Bogdanove, A. J. AU - Sessa, G. PY - 2003 DA - 2003// TI - Understanding the functions of plant disease resistance proteins JO - Annu Rev Plant Biol VL - 54 UR - https://doi.org/10.1146/annurev.arplant.54.031902.135035 DO - 10.1146/annurev.arplant.54.031902.135035 ID - Martin2003 ER - TY - JOUR AU - Vander Biezen, E. A. AU - Jones, J. D. G. PY - 1998 DA - 1998// TI - The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals JO - Curr Biol VL - 8 UR - https://doi.org/10.1016/S0960-9822(98)70145-9 DO - 10.1016/S0960-9822(98)70145-9 ID - Vander Biezen1998 ER - TY - JOUR AU - Jones, J. D. G. AU - Dangl, J. L. PY - 2006 DA - 2006// TI - The plant immune system JO - Nature VL - 444 UR - https://doi.org/10.1038/nature05286 DO - 10.1038/nature05286 ID - Jones2006 ER - TY - JOUR AU - Tameling, W. I. L. AU - Elzinga, S. D. J. AU - Darmin, P. S. PY - 2002 DA - 2002// TI - The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity JO - Plant Cell VL - 14 UR - https://doi.org/10.1105/tpc.005793 DO - 10.1105/tpc.005793 ID - Tameling2002 ER - TY - JOUR AU - Caicedo, A. L. AU - Schaal, B. A. AU - Kunkel, B. N. PY - 1999 DA - 1999// TI - Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana JO - Proc Natl Acad Sci VL - 96 UR - https://doi.org/10.1073/pnas.96.1.302 DO - 10.1073/pnas.96.1.302 ID - Caicedo1999 ER - TY - JOUR AU - Dill, K. A. PY - 1990 DA - 1990// TI - Dominant forces in protein folding JO - Biochemistry VL - 29 UR - https://doi.org/10.1021/bi00483a001 DO - 10.1021/bi00483a001 ID - Dill1990 ER - TY - STD TI - Mattos C (2002) Protein-water interactions in a dynamic world. Trends Biochem Sci. 8. 27(4):203-208. ID - ref41 ER - TY - JOUR AU - Dodds, P. N. AU - Rathjen, J. P. PY - 2010 DA - 2010// TI - Plant immunity: towards an integrated view of plant-pathogen interactions JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2812 DO - 10.1038/nrg2812 ID - Dodds2010 ER - TY - STD TI - Wang, Jizong, Hu M, Wang, Jia, Qi J, Han Z, Wang G, et al (2019) Reconstitution and structure of a plant NLR resistosome conferring immunity. Science (80- ). 364:eaav5870. ID - ref43 ER - TY - JOUR AU - Keen, N. T. PY - 1990 DA - 1990// TI - Gene-for-gene complementarity in plant-pathogen interactions JO - Annu Rev Genet VL - 24 UR - https://doi.org/10.1146/annurev.ge.24.120190.002311 DO - 10.1146/annurev.ge.24.120190.002311 ID - Keen1990 ER - TY - JOUR AU - Inohara, N. AU - Nuñez, G. PY - 2003 DA - 2003// TI - Cell death and immunity: NODs: intracellular proteins involved in inflammation and apoptosis JO - Nat Rev Immunol VL - 3 UR - https://doi.org/10.1038/nri1086 DO - 10.1038/nri1086 ID - Inohara2003 ER - TY - STD TI - Mani A, Sankaranarayanan K (2018) In silico analysis of Natural resistance-associated Macrophage Protein (NRAMP) family of transporters in rice. Protein J 1–11. ID - ref46 ER - TY - JOUR AU - Sarkar, C. AU - Saklani, B. K. AU - Singh, P. K. PY - 2019 DA - 2019// TI - Variation in the LRR region of Pi54 protein alters its interaction with the Avr-Pi54 protein revealed by in silico analysis JO - PLoS One VL - 14 UR - https://doi.org/10.1371/journal.pone.0224088 DO - 10.1371/journal.pone.0224088 ID - Sarkar2019 ER - TY - JOUR AU - Hammond-Kosack, K. E. AU - Jones, J. D. G. PY - 1996 DA - 1996// TI - Resistance gene-dependent plant defense responses JO - Plant Cell VL - 8 ID - Hammond-Kosack1996 ER - TY - JOUR AU - Deslandes, L. AU - Olivier, J. AU - Peeters, N. PY - 2003 DA - 2003// TI - Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.1230660100 DO - 10.1073/pnas.1230660100 ID - Deslandes2003 ER - TY - JOUR AU - Dodds, P. N. AU - Lawrence, G. J. AU - Catanzariti, A. M. AU - Teh, T. AU - Wang, C. I. A. AU - Ayliffe, M. AU - Kobe, B. AU - Ellis, J. G. PY - 2006 DA - 2006// TI - Direct protein interaction underlies gene-for-gene specificity and co-evolution of the flax resistance genes and flax rust avirulence genes JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0602577103 DO - 10.1073/pnas.0602577103 ID - Dodds2006 ER - TY - STD TI - Jia J, McAdams SA, Bryan GT, Hershey HP, and Valent B (2000) Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO (Eur. Mol. Biol. Organ.) J. 19:4004-4014. ID - ref51 ER - TY - JOUR AU - Ueda, H. AU - Yamaguchi, Y. AU - Sano, H. PY - 2006 DA - 2006// TI - Direct interaction between the tobacco mosaic virus helicase domain and the ATP-bound resistance protein, N factor during the hypersensitive response in tobacco plants JO - Plant Mol Biol VL - 61 UR - https://doi.org/10.1007/s11103-005-5817-8 DO - 10.1007/s11103-005-5817-8 ID - Ueda2006 ER - TY - JOUR AU - Dodds, P. N. AU - Fafiqi, M. AU - Gan, P. H. P. AU - Hardham, A. R. AU - Jones, D. A. AU - Ellis, J. G. PY - 2009 DA - 2009// TI - Effectors of biotrophic fungi and oomycetes: pathogenicity factors and triggers of host resistance JO - New Phytol VL - 183 UR - https://doi.org/10.1111/j.1469-8137.2009.02922.x DO - 10.1111/j.1469-8137.2009.02922.x ID - Dodds2009 ER - TY - JOUR AU - Ellis, J. G. AU - Dodds, P. N. AU - Lawrence, G. J. PY - 2007 DA - 2007// TI - The role of secreted proteins in diseases of plants caused by rust, powdery mildew, and smut fungi JO - Curr Opin Microbiol VL - 10 UR - https://doi.org/10.1016/j.mib.2007.05.015 DO - 10.1016/j.mib.2007.05.015 ID - Ellis2007 ER -