ycf1-ndhF genes, the most promising plastid genomic barcode, sheds light on phylogeny at low taxonomic levels in Prunus persica

Amar, Mohamed Hamdy

doi:10.1186/s43141-020-00057-3

Journal of Genetic Engineering and Biotechnology

Table 1 List of taxa sampled in this study with the gene length, position, overlapped, and intergenic regions

From: ycf1-ndhF genes, the most promising plastid genomic barcode, sheds light on phylogeny at low taxonomic levels in Prunus persica

		Ycf1 gene			ndhF gene
Sp. code	Species Name	Start (bp)	End (bp)	Gene Length (bp)	Start (bp)	End (bp)	Gene length (bp)	Overlapped (bp)	IGS (bp)	Full length ycf1-ndhF (bp)
1	Pyrus pyrifolia	113121	114194	1073	114195	116438	2243	–	–	3316
2	Malus prunifolia	112903	113976	1073	113977	116220	2243	–	–	3316
3	Pyrus spinosa	113405	114478	1073	114479	116722	2243	–	–	3316
4	P. persica	111350	112417	1067	112410	114635	2225	124	–	3416
5	P. maximowiczii	111213	112274	1061	112251	114482	2231	–	9	3301
6	P. serrulata	111238	112293	1055	112303	114528	2225	–	9	3289
7	P. subhirtella	111320	112375	1055	112385	114610	2225	116	–	3396
8	P. yedoensis	111292	112377	1085	112362	114590	2228	–	16	3329
9	P. mongolica	111209	112264	1055	112281	114506	2225	–	59	3339
10	P. dulcis	111747	112808	1061	112868	115099	2231	109	–	3401
11	P.davidiana	111176	112222	1046	112214	114445	2231	109	–	3386
12	P. mume	111579	112625	1046	112617	114848	2231	109	–	3386
13	P. kansuensis	111175	112221	1046	112213	114444	2231	124	–	3401
14	P. yedoensis	111091	112152	1061	112129	114360	2231	116	–	3408
15	P. pseudocerasus	111318	112403	1085	112388	114616	2228	–	9	3322
16	P. humilis	111277	112332	1055	112342	114567	2225	–	23	3303
17	P. serotina	111439	112485	1046	112510	114708	2198	–	24	3268
18	P. pedunculata	112548	113585	1037	113610	115835	2225	109	–	3371
19	P. tomentosa	111410	112456	1046	112448	114679	2231	124	–	3401
20	P. takesimensis	111938	112999	1061	112976	115207	2231	108	–	3400
21	(CJX) Cultivar (P. persica)	111182	112228	1046	112220	114451	2231	109	–	3386
22	(CDH) Cultivar (P. persica)	111208	112269	1061	112246	114477	2231	124	–	3416
23	(CMJ) Cultivar (P. persica)	111214	112275	1061	112252	114480	2228	124	–	3413
24	(OMT) Ornamental (P. persica)	111200	112261	1061	112238	114469	2231	124	–	3416
25	(WGH) (P. mira)	111182	112228	1046	112220	114451	2231	109	–	3386

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