Table 5 The PIC value and other information obtained from AFLP using four primer combinations for Thymus species
From: Genetic diversity analysis of some Egyptian Origanum and Thymus species using AFLP markers
Parameters and their abbreviations | Â | AFLP |
|---|---|---|
Number of primer combinations | U | 4 |
Number of non-polymorphic bands | nnp | 102 |
Number of polymorphic bands | np | 69 |
Average number of polymorphic bands/assay unit | np/U | 17 |
Number of loci | L | 171 |
Number of loci/assay unit | nu | 43 |
Total number of effective alleles | Ne | 198 |
Total banding pattern | Bp | 27 |
Effective number of patterns/ assay unit | P | 7 |
Min range of PIC value | PIC | 0.96 |
Max range of PIC value | PIC | 0.99 |
Average of PIC | PIC | 0.97 |
Fraction of polymorphic loci | β | 0.40 |
Assay efficiency index | Ai | 49.4 |
Effective multiplex ratio | E | 17.25 |
Marker index | MI | 16.7 |