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Journal of Genetic Engineering and Biotechnology

Table 3 FSPLICE prediction of the donor and acceptor splice of both referring sequences and their diplotypes of GHRL 262-bp fragment for both sheep and goats

From: GHRL gene-based genotyping of ovine and caprine breeds reveals highly polymorphic intronic sequences in Awassi sheep with several RNA motifs

Diplotype

Acceptor(AG) sites, 1P: (134 W:)

Threshold 4.175 (90%)

Acceptor(AG) sites, 2P: (213 W:)

Threshold 4.175 (90%)

Donor(GT) sites, 1 P: (78 W:)

Threshold 6.099 (90%)

Ref.

5.58 Seq: tctgcAGtggaa

8.47 Seq: atttcAGaaacc

6.10 Seq: gcactGTaaggc

AB

5.33 Seq: tttgcAGtggaa

8.47 Seq:atttcAGaaacc

6.10 Seq: gcactGTaaggc

BB

6.33 Seq: tttgcAGtggaa

8.47 Seq:atttcAGaaacc

6.10 Seq: gcactGTaaggc

AC

Not found

8.47 Seq: atttcAGaaacc

6.10 Seq: gcactGTaaggc

BC

6.33 Seq: tttgcAGtggaa

8.47 Seq:atttcAGaaacc

6.10 Seq: gcactGTaaggc

  1. Acceptor(AG) sites the type of splicing sites, P: position of splicing site, W: weight of site. Threshold 4.175 (90%) means that for the current threshold value (4.175) 90% of true splicing sites are being classified as true
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